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GALE1 GALE1 psbF psbF petB petB psaD psaD petF petF atpE atpE atpA atpA psbA psbA psaB psaB petC petC psbD psbD UGDH1 UGDH1 Tkl Tkl B7FV31_PHATC B7FV31_PHATC B7FYA7_PHATC B7FYA7_PHATC B7G0L4_PHATC B7G0L4_PHATC PFK1 PFK1 Atp1 Atp1 PGP_2 PGP_2 B7G5R3_PHATC B7G5R3_PHATC B7G627_PHATC B7G627_PHATC PEPCase_2 PEPCase_2 B7G963_PHATC B7G963_PHATC FbaC2 FbaC2 PFK_1 PFK_1 PGP PGP rbcL rbcL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GALE1UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (358 aa)
psbFCytochrome b559 subunit beta; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family. (43 aa)
petBCytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (215 aa)
psaDPhotosystem I ferredoxin-binding protein. (139 aa)
petFFerredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (99 aa)
atpEATP synthase epsilon chain, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. (133 aa)
atpAATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (505 aa)
psbAPhotosystem II protein D1; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. (360 aa)
psaBPhotosystem I P700 chlorophyll a apoprotein A2; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6. (733 aa)
petCCytochrome b6-f complex iron-sulfur subunit; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (217 aa)
psbDPhotosystem II D2 protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex. (351 aa)
UGDH1UDP-glucose 6-dehydrogenase. (475 aa)
TklTransketolase. (711 aa)
B7FV31_PHATCPredicted protein. (440 aa)
B7FYA7_PHATCUDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (365 aa)
B7G0L4_PHATCPredicted protein. (621 aa)
PFK1Pyrophosphate-dependent phosphofructose kinase. (564 aa)
Atp1ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (544 aa)
PGP_2Phosphoglycolate phosphatase. (389 aa)
B7G5R3_PHATCTransketolase. (684 aa)
B7G627_PHATCArginase; Belongs to the arginase family. (301 aa)
PEPCase_2Predicted protein. (877 aa)
B7G963_PHATCGlucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. (477 aa)
FbaC2Fructose-1,6-bisphosphate aldolase. (439 aa)
PFK_1Pyrophosphate-dependent phosphofructose kinase. (563 aa)
PGP2-phosphoglycolate phosphatase. (314 aa)
rbcLRibulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. (490 aa)
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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