29 items (Phaeodactylum tricornutum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHC	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1702 aa)
	B7G715_PHATC	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (264 aa)
	ACC1	Acetyl-coa carboxylase. (2092 aa)
	Lhcf13	Protein fucoxanthin chlorophyll a/c protein. (197 aa)
	B7G9G2_PHATC	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (171 aa)
	FbaC2	Fructose-1,6-bisphosphate aldolase. (439 aa)
	Lhcr11	Protein fucoxanthin chl a/c protein. (246 aa)
	B7GB44_PHATC	Predicted protein. (361 aa)
	B7GE11_PHATC	Predicted protein. (104 aa)
	FbaC5	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family. (401 aa)
	B7S3U6_PHATC	Phosphodiesterase. (515 aa)
	B7G195_PHATC	Predicted protein; Belongs to the small heat shock protein (HSP20) family. (281 aa)
	rbcS	Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit. (139 aa)
	PHATR_21122	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (447 aa)
	HSP20	HSP20; Belongs to the small heat shock protein (HSP20) family. (216 aa)
	EF-1	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (439 aa)
	PHATR_44109	Annexin. (330 aa)
	B7FP19_PHATC	Predicted protein. (463 aa)
	B7FPL6_PHATC	Fucoxanthin chlorophyll a/c protein. (193 aa)
	SOD2	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (226 aa)
	B7FQU7_PHATC	Predicted protein; Belongs to the universal ribosomal protein uL15 family. (146 aa)
	H3-1c	Histone H3; Belongs to the histone H3 family. (136 aa)
	UBI3	Ubiquitin extension protein 3. (155 aa)
	ACS1	Long chain acyl-coa synthetase. (721 aa)
	SOD1	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (216 aa)
	B7G0Y4_PHATC	Ammonium transporter. (521 aa)
	H3.3	Histone H3; Belongs to the histone H3 family. (136 aa)
	B7G2J5_PHATC	Nucleotide-binding protein. (459 aa)
	B7G386_PHATC	Predicted protein; Belongs to the peroxidase family. (331 aa)

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACC1	ACS1	B7G7S4	B7FYK0	Acetyl-coa carboxylase.	Long chain acyl-coa synthetase.	0.792
ACC1	FbaC2	B7G7S4	B7G9G9	Acetyl-coa carboxylase.	Fructose-1,6-bisphosphate aldolase.	0.588
ACC1	FbaC5	B7G7S4	B7GE67	Acetyl-coa carboxylase.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.542
ACS1	ACC1	B7FYK0	B7G7S4	Long chain acyl-coa synthetase.	Acetyl-coa carboxylase.	0.792
ACS1	FbaC5	B7FYK0	B7GE67	Long chain acyl-coa synthetase.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.420
B7FQU7_PHATC	B7G2J5_PHATC	B7FQU7	B7G2J5	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Nucleotide-binding protein.	0.606
B7FQU7_PHATC	B7G715_PHATC	B7FQU7	B7G715	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Predicted protein; Belongs to the universal ribosomal protein uS5 family.	0.974
B7FQU7_PHATC	B7G9G2_PHATC	B7FQU7	B7G9G2	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
B7FQU7_PHATC	B7GB44_PHATC	B7FQU7	B7GB44	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Predicted protein.	0.606
B7FQU7_PHATC	B7GE11_PHATC	B7FQU7	B7GE11	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Predicted protein.	0.623
B7FQU7_PHATC	B7S3U6_PHATC	B7FQU7	B7S3U6	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Phosphodiesterase.	0.540
B7FQU7_PHATC	EF-1	B7FQU7	B5Y4J2	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.892
B7FQU7_PHATC	H3-1c	B7FQU7	B7FR39	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Histone H3; Belongs to the histone H3 family.	0.623
B7FQU7_PHATC	H3.3	B7FQU7	B7G218	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Histone H3; Belongs to the histone H3 family.	0.622
B7FQU7_PHATC	PHATR_21122	B7FQU7	B5Y3W7	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.733
B7FQU7_PHATC	SOD1	B7FQU7	B7G0L6	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.702
B7FQU7_PHATC	SOD2	B7FQU7	B7FPQ3	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.702
B7FQU7_PHATC	UBI3	B7FQU7	B7FY02	Predicted protein; Belongs to the universal ribosomal protein uL15 family.	Ubiquitin extension protein 3.	0.999
B7G0Y4_PHATC	B7G195_PHATC	B7G0Y4	B7G195	Ammonium transporter.	Predicted protein; Belongs to the small heat shock protein (HSP20) family.	0.587
B7G0Y4_PHATC	CHC	B7G0Y4	B7G4Y3	Ammonium transporter.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.565