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UBA3 UBA3 psbD psbD psbE psbE psbB psbB petD petD petB petB rpl1 rpl1 atpG atpG atpA atpA psaE psaE psbA psbA rpl5 rpl5 tufA tufA psaL psaL psaB psaB KCT3 KCT3 PHATR_13358 PHATR_13358 PHATR_50995 PHATR_50995 PHATR_28222 PHATR_28222 HSP20C HSP20C PHATR_25714 PHATR_25714 Prk Prk UGDH1 UGDH1 LHL1 LHL1 B7FP80_PHATC B7FP80_PHATC SOD2 SOD2 B7FQ88_PHATC B7FQ88_PHATC ACL1 ACL1 B7FR38_PHATC B7FR38_PHATC FABI FABI GapC4 GapC4 B7FST0_PHATC B7FST0_PHATC GDCH GDCH B7FT93_PHATC B7FT93_PHATC B7FXN2_PHATC B7FXN2_PHATC HSP20A HSP20A ACS4 ACS4 UBA1 UBA1 Lhcx1 Lhcx1 B7FZ30_PHATC B7FZ30_PHATC B7FZ32_PHATC B7FZ32_PHATC PsbO PsbO PK4a PK4a PK4b PK4b PDHB1 PDHB1 B7G086_PHATC B7G086_PHATC SOD1 SOD1 B7G0R5_PHATC B7G0R5_PHATC B7G0T8_PHATC B7G0T8_PHATC FABFa FABFa B7G317_PHATC B7G317_PHATC PTD9 PTD9 DHLTA_2 DHLTA_2 B7G3X3_PHATC B7G3X3_PHATC hUba1 hUba1 PFK1 PFK1 B7G518_PHATC B7G518_PHATC B7G529_PHATC B7G529_PHATC PPdK PPdK B7G5A1_PHATC B7G5A1_PHATC GapC1 GapC1 B7G627_PHATC B7G627_PHATC GapC2a GapC2a GLNA GLNA Lhcf8 Lhcf8 PK1 PK1 PK5 PK5 B7G997_PHATC B7G997_PHATC PK3 PK3 PK2 PK2 PEPCK1 PEPCK1 PDHA1 PDHA1 B7GAH6_PHATC B7GAH6_PHATC B7GB47_PHATC B7GB47_PHATC PK6 PK6 B7GBQ5_PHATC B7GBQ5_PHATC GAPDH_3 GAPDH_3 B7GCZ6_PHATC B7GCZ6_PHATC GLO_2 GLO_2 GPI_1 GPI_1 GPI_2 GPI_2 GPI_3 GPI_3 PFK_1 PFK_1 tsf tsf
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
UBA3Ubiquitin-activating enzyme E1, protein 3. (462 aa)
psbDPhotosystem II D2 protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex. (351 aa)
psbECytochrome b559 subunit alpha; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family. (84 aa)
psbBPhotosystem II CP47 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily. (509 aa)
petDCytochrome b6-f complex subunit 4; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (160 aa)
petBCytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (215 aa)
rpl150S ribosomal protein L1, chloroplastic; Binds directly to 23S rRNA. Might be involved in E site tRNA release (Potential). (230 aa)
atpGATP synthase subunit b', chloroplastic; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (156 aa)
atpAATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (505 aa)
psaEPhotosystem I reaction center subunit IV; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family. (69 aa)
psbAPhotosystem II protein D1; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. (360 aa)
rpl550S ribosomal protein L5, chloroplastic; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit. (238 aa)
tufAElongation factor Tu, chloroplastic; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily. (409 aa)
psaLPhotosystem I reaction center subunit XI. (151 aa)
psaBPhotosystem I P700 chlorophyll a apoprotein A2; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6. (733 aa)
KCT3Beta-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (457 aa)
PHATR_13358Cytochrome b6-f complex iron-sulfur subunit; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (178 aa)
PHATR_50995Predicted protein. (287 aa)
PHATR_28222Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. (316 aa)
HSP20CHeat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family. (181 aa)
PHATR_25714Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (205 aa)
PrkPhosphoribulokinase. (396 aa)
UGDH1UDP-glucose 6-dehydrogenase. (475 aa)
LHL1Early light induced protein. (224 aa)
B7FP80_PHATC40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (205 aa)
SOD2Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (226 aa)
B7FQ88_PHATCPredicted protein; Belongs to the protein kinase superfamily. (325 aa)
ACL1Precursor of ligase long chain acyl-coa ligase. (678 aa)
B7FR38_PHATCPredicted protein. (566 aa)
FABIEnoyl-acp reductase. (310 aa)
GapC4Glyceraldehyde-3-phosphate dehydrogenase. (336 aa)
B7FST0_PHATCPredicted protein. (295 aa)
GDCHGlycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family. (157 aa)
B7FT93_PHATCShort-chain dehydrogenase/reductase. (329 aa)
B7FXN2_PHATCPredicted protein. (675 aa)
HSP20AHeat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family. (163 aa)
ACS4Long chain acyl-coa synthetase. (663 aa)
UBA1Ubiquitin-activating enzyme E1, protein 1. (1108 aa)
Lhcx1Protein fucoxanthin chlorophyll a/c protein. (209 aa)
B7FZ30_PHATCEnoyl-coa hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (305 aa)
B7FZ32_PHATCPredicted protein. (331 aa)
PsbOOxygen-evolving enhancer protein 1. (308 aa)
PK4aPyruvate kinase; Belongs to the pyruvate kinase family. (535 aa)
PK4bPyruvate kinase; Belongs to the pyruvate kinase family. (539 aa)
PDHB1Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (360 aa)
B7G086_PHATCPredicted protein. (719 aa)
SOD1Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (216 aa)
B7G0R5_PHATC60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (183 aa)
B7G0T8_PHATCEukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (1022 aa)
FABFa3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (433 aa)
B7G317_PHATCPredicted protein. (251 aa)
PTD9Desaturase delta 9 desaturase; Belongs to the fatty acid desaturase type 1 family. (333 aa)
DHLTA_2Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (435 aa)
B7G3X3_PHATCGlutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (450 aa)
hUba1Ubiquitin-activating enzyme E1, protein 2; Belongs to the ubiquitin-activating E1 family. (1050 aa)
PFK1Pyrophosphate-dependent phosphofructose kinase. (564 aa)
B7G518_PHATCIsocitrate lyase. (593 aa)
B7G529_PHATCPredicted protein. (232 aa)
PPdKPredicted protein. (1011 aa)
B7G5A1_PHATCGlutamine synthetase. (416 aa)
GapC1Glyceraldehyde-3-phosphate dehydrogenase. (379 aa)
B7G627_PHATCArginase; Belongs to the arginase family. (301 aa)
GapC2aGlyceraldehyde-3-phosphate dehydrogenase. (334 aa)
GLNAGLNA, glutamine synthase; Belongs to the glutamine synthetase family. (716 aa)
Lhcf8Protein fucoxanthin chlorophyll a/c protein. (200 aa)
PK1Pyruvate kinase; Belongs to the pyruvate kinase family. (591 aa)
PK5Pyruvate kinase; Belongs to the pyruvate kinase family. (554 aa)
B7G997_PHATCNitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. (891 aa)
PK3Pyruvate kinase; Belongs to the pyruvate kinase family. (543 aa)
PK2Pyruvate kinase; Belongs to the pyruvate kinase family. (513 aa)
PEPCK1Phosphoenolpyruvate carboxykinase. (612 aa)
PDHA1Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (413 aa)
B7GAH6_PHATCPredicted protein; Belongs to the protein kinase superfamily. (422 aa)
B7GB47_PHATCPredicted protein. (376 aa)
PK6Pyruvate kinase; Belongs to the pyruvate kinase family. (556 aa)
B7GBQ5_PHATCPredicted protein. (676 aa)
GAPDH_3Glyceraldehyde-3-phosphate dehydrogenase. (351 aa)
B7GCZ6_PHATC3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (356 aa)
GLO_2Glyoxalase. (262 aa)
GPI_1Glucose-6-phosphate isomerase; Belongs to the GPI family. (554 aa)
GPI_2Glucose-6-phosphate isomerase; Belongs to the GPI family. (601 aa)
GPI_3Glucose-6-phosphate isomerase; Belongs to the GPI family. (786 aa)
PFK_1Pyrophosphate-dependent phosphofructose kinase. (563 aa)
tsfElongation factor Ts, chloroplastic; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (202 aa)
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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