(33 nodes) Type II protein secretion system complex network (Pseudomonas benzenivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

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protein homology

Your Input:
	SDG76939.1	General secretion pathway protein J. (229 aa)
	SDG73306.1	Type II/IV secretion system protein. (465 aa)
	SDG76788.1	General secretion pathway protein D. (643 aa)
	SDG76801.1	General secretion pathway protein C. (214 aa)
	SDG76826.1	General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (495 aa)
	SDG76850.1	General secretion pathway protein F. (405 aa)
	SDG76877.1	General secretion pathway protein G. (145 aa)
	SDG76891.1	General secretion pathway protein H. (176 aa)
	SDG76915.1	General secretion pathway protein I. (129 aa)
	SDH68912.1	General secretion pathway protein F. (406 aa)
	SDG76966.1	General secretion pathway protein K. (321 aa)
	SDG77008.1	General secretion pathway protein M. (176 aa)
	SDH05299.1	General secretion pathway protein E. (594 aa)
	SDH68884.1	General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (573 aa)
	SDH99825.1	Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (289 aa)
	SDH99802.1	Type IV pilus assembly protein PilC. (406 aa)
	SDH99777.1	Type IV pilus assembly protein PilB. (566 aa)
	SDH85463.1	Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB. (744 aa)
	SDH76987.1	Competence protein ComEA. (107 aa)
	SDH69159.1	General secretion pathway protein D. (731 aa)
	SDH69109.1	Type II secretion system (T2SS), protein M subtype b. (197 aa)
	SDH69077.1	General secretion pathway protein L. (369 aa)
	SDH69051.1	General secretion pathway protein K. (300 aa)
	SDH69022.1	General secretion pathway protein J. (220 aa)
	SDH68993.1	General secretion pathway protein I. (130 aa)
	SDH68964.1	General secretion pathway protein H. (188 aa)
	SDG50930.1	Type IV fimbrial biogenesis protein FimT. (157 aa)
	SDG50960.1	Type IV fimbrial biogenesis protein FimT. (141 aa)
	SDG51139.1	Type IV fimbrial biogenesis protein FimT. (171 aa)
	SDG60503.1	Type IV pilus assembly protein PilO. (207 aa)
	SDG71543.1	Type IV pilus biogenesis. (203 aa)
	SDG73273.1	Hypothetical protein. (69 aa)
	SDH68937.1	General secretion pathway protein G. (148 aa)

Your Current Organism:

Pseudomonas benzenivorans

NCBI taxonomy Id: 556533
Other names: CIP 109857, DSM 8628, P. benzenivorans, Pseudomonas benzenivorans Lang et al. 2012 emend. Hameed et al. 2014, Pseudomonas sp. DSM 8628

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDG50930.1	SDG60503.1	SAMN05216603_102103	SAMN05216603_102452	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilO.	0.778
SDG50960.1	SDG51139.1	SAMN05216603_102104	SAMN05216603_102110	Type IV fimbrial biogenesis protein FimT.	Type IV fimbrial biogenesis protein FimT.	0.772
SDG50960.1	SDG60503.1	SAMN05216603_102104	SAMN05216603_102452	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilO.	0.572
SDG51139.1	SDG50960.1	SAMN05216603_102110	SAMN05216603_102104	Type IV fimbrial biogenesis protein FimT.	Type IV fimbrial biogenesis protein FimT.	0.772
SDG51139.1	SDG60503.1	SAMN05216603_102110	SAMN05216603_102452	Type IV fimbrial biogenesis protein FimT.	Type IV pilus assembly protein PilO.	0.697
SDG60503.1	SDG50930.1	SAMN05216603_102452	SAMN05216603_102103	Type IV pilus assembly protein PilO.	Type IV fimbrial biogenesis protein FimT.	0.778
SDG60503.1	SDG50960.1	SAMN05216603_102452	SAMN05216603_102104	Type IV pilus assembly protein PilO.	Type IV fimbrial biogenesis protein FimT.	0.572
SDG60503.1	SDG51139.1	SAMN05216603_102452	SAMN05216603_102110	Type IV pilus assembly protein PilO.	Type IV fimbrial biogenesis protein FimT.	0.697
SDG60503.1	SDG73273.1	SAMN05216603_102452	SAMN05216603_103225	Type IV pilus assembly protein PilO.	Hypothetical protein.	0.692
SDG60503.1	SDG73306.1	SAMN05216603_102452	SAMN05216603_103226	Type IV pilus assembly protein PilO.	Type II/IV secretion system protein.	0.692
SDG60503.1	SDG76826.1	SAMN05216603_102452	SAMN05216603_103361	Type IV pilus assembly protein PilO.	General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.692
SDG60503.1	SDG76850.1	SAMN05216603_102452	SAMN05216603_103362	Type IV pilus assembly protein PilO.	General secretion pathway protein F.	0.717
SDG60503.1	SDH05299.1	SAMN05216603_102452	SAMN05216603_105251	Type IV pilus assembly protein PilO.	General secretion pathway protein E.	0.692
SDG60503.1	SDH68884.1	SAMN05216603_102452	SAMN05216603_11226	Type IV pilus assembly protein PilO.	General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.692
SDG60503.1	SDH68912.1	SAMN05216603_102452	SAMN05216603_11227	Type IV pilus assembly protein PilO.	General secretion pathway protein F.	0.717
SDG60503.1	SDH69077.1	SAMN05216603_102452	SAMN05216603_11233	Type IV pilus assembly protein PilO.	General secretion pathway protein L.	0.771
SDG60503.1	SDH85463.1	SAMN05216603_102452	SAMN05216603_11527	Type IV pilus assembly protein PilO.	Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.	0.743
SDG60503.1	SDH99777.1	SAMN05216603_102452	SAMN05216603_11883	Type IV pilus assembly protein PilO.	Type IV pilus assembly protein PilB.	0.739
SDG60503.1	SDH99802.1	SAMN05216603_102452	SAMN05216603_11884	Type IV pilus assembly protein PilO.	Type IV pilus assembly protein PilC.	0.808
SDG60503.1	SDH99825.1	SAMN05216603_102452	SAMN05216603_11885	Type IV pilus assembly protein PilO.	Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.542

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