(68 nodes) Mixed, incl. Collagen biosynthesis and modifying enzymes, and Histone deubiquitination network (Cuculus canorus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N303_11496	Mucin-16. (117 aa)
	N303_00926	Multimerin-1. (1015 aa)
	N303_08710	Cartilage-associated protein. (232 aa)
	N303_03696	Uncharacterized protein C2orf62. (100 aa)
	N303_15434	Uncharacterized protein. (667 aa)
	N303_09959	Complement C1q tumor necrosis factor-related protein 7. (289 aa)
	N303_01690	Collagen alpha-1(XVII) chain. (1498 aa)
	N303_08969	Collagen alpha-2(IV) chain. (181 aa)
	N303_09027	Collagen alpha-1(I) chain. (120 aa)
	N303_00925	Uncharacterized protein. (150 aa)
	N303_11492	Mucin-16. (125 aa)
	N303_05174	Von Willebrand factor A domain-containing protein 2. (735 aa)
	N303_02145	Guanine nucleotide-binding protein subunit beta-like 1. (328 aa)
	ATXN7L3	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (348 aa)
	N303_07866	Macrophage receptor MARCO. (480 aa)
	N303_02137	Uncharacterized protein. (64 aa)
	N303_07202	Collagen alpha-1(XXVIII) chain. (940 aa)
	N303_05237	Uncharacterized protein. (66 aa)
	N303_08274	Protein CASC4. (409 aa)
	N303_00931	Leucine zipper protein 2. (224 aa)
	N303_02798	Activating transcription factor 7-interacting protein 1. (1098 aa)
	N303_04485	Ubiquitin carboxyl-terminal hydrolase. (684 aa)
	N303_06801	Collagen alpha-1(XV) chain. (1256 aa)
	N303_06868	Collagen alpha-1(VIII) chain. (132 aa)
	N303_05884	Ataxin-7-like 1. (766 aa)
	N303_15529	Calmin. (173 aa)
	N303_01382	Ubiquitin carboxyl-terminal hydrolase. (492 aa)
	N303_10707	Transcription initiation protein SPT3. (334 aa)
	N303_07946	Transcriptional adapter 1. (335 aa)
	N303_12080	GAS2-like 2. (270 aa)
	N303_02599	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1. (703 aa)
	N303_06998	Transcription and mRNA export factor ENY2. (98 aa)
	N303_04810	ARL14 effector protein-like. (120 aa)
	N303_08970	Collagen alpha-2(IV) chain. (226 aa)
	N303_14295	Uncharacterized protein. (116 aa)
	N303_04793	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (174 aa)
	N303_04017	Growth arrest-specific protein 2. (314 aa)
	N303_12181	Collagen alpha-1(X) chain. (673 aa)
	N303_12717	Collagen alpha-3(IX) chain. (139 aa)
	N303_03374	Collagen alpha-1(XI) chain. (1743 aa)
	N303_00810	Ubiquitin carboxyl-terminal hydrolase. (456 aa)
	N303_09830	Transcriptional adapter 2-beta. (330 aa)
	N303_11579	ARL14 effector protein. (260 aa)
	N303_08872	Complement C1q tumor necrosis factor-related protein 2. (286 aa)
	N303_14524	Protein jagunal 1. (177 aa)
	N303_00598	Histone acetyltransferase KAT2A. (724 aa)
	N303_09113	Complement C1q tumor necrosis factor-related protein 3. (246 aa)
	N303_01515	Collagen alpha-2(V) chain. (119 aa)
	N303_03011	Prolyl 3-hydroxylase 2. (548 aa)
	N303_15790	Prolyl 3-hydroxylase 3. (591 aa)
	N303_04759	Collagen alpha-1(XXI) chain. (949 aa)
	N303_11352	RNA-binding protein 20. (151 aa)
	N303_10241	Histone-lysine N-methyltransferase SETDB2. (735 aa)
	N303_05758	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (169 aa)
	N303_07499	Lysozyme g. (130 aa)
	N303_06008	Collagen alpha-2(VIII) chain. (523 aa)
	N303_06069	Collagen alpha-1(XXVII) chain. (1201 aa)
	N303_11353	RNA-binding protein 20. (707 aa)
	N303_10201	Transcription factor SPT20. (748 aa)
	N303_06189	Collagen alpha-1(V) chain. (1817 aa)
	N303_04929	Procollagen galactosyltransferase 2. (553 aa)
	N303_11097	Ubiquitin carboxyl-terminal hydrolase. (683 aa)
	N303_12103	Collagen alpha-1(XXVI) chain. (408 aa)
	N303_04224	Leukemia inhibitory factor receptor. (1078 aa)
	N303_08583	Ataxin-7. (773 aa)
	N303_04552	STAGA complex 65 subunit gamma. (414 aa)
	N303_14528	Transcriptional adapter 3. (432 aa)
	N303_14592	Transcriptional adapter. (443 aa)

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATXN7L3	N303_00598	A0A091FQC7	A0A091GD84	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Histone acetyltransferase KAT2A.	0.862
ATXN7L3	N303_00810	A0A091FQC7	A0A091GAC0	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Ubiquitin carboxyl-terminal hydrolase.	0.983
ATXN7L3	N303_01382	A0A091FQC7	A0A091FY75	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Ubiquitin carboxyl-terminal hydrolase.	0.501
ATXN7L3	N303_04485	A0A091FQC7	A0A091FU97	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Ubiquitin carboxyl-terminal hydrolase.	0.561
ATXN7L3	N303_04552	A0A091FQC7	A0A091GX34	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	STAGA complex 65 subunit gamma.	0.917
ATXN7L3	N303_05884	A0A091FQC7	A0A091FWN5	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Ataxin-7-like 1.	0.947
ATXN7L3	N303_06998	A0A091FQC7	A0A091G502	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Transcription and mRNA export factor ENY2.	0.990
ATXN7L3	N303_07946	A0A091FQC7	A0A091G2S6	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Transcriptional adapter 1.	0.960
ATXN7L3	N303_08583	A0A091FQC7	A0A091GUR1	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Ataxin-7.	0.970
ATXN7L3	N303_09830	A0A091FQC7	A0A091GAG3	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Transcriptional adapter 2-beta.	0.882
ATXN7L3	N303_10201	A0A091FQC7	A0A091GL65	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Transcription factor SPT20.	0.980
ATXN7L3	N303_10707	A0A091FQC7	A0A091FZU8	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Transcription initiation protein SPT3.	0.973
ATXN7L3	N303_11097	A0A091FQC7	A0A091GNB8	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Ubiquitin carboxyl-terminal hydrolase.	0.531
ATXN7L3	N303_14295	A0A091FQC7	A0A091G6L3	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Uncharacterized protein.	0.543
ATXN7L3	N303_14528	A0A091FQC7	A0A091H0L3	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Transcriptional adapter 3.	0.980
ATXN7L3	N303_14592	A0A091FQC7	A0A091H3R2	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Transcriptional adapter.	0.610
N303_00598	ATXN7L3	A0A091GD84	A0A091FQC7	Histone acetyltransferase KAT2A.	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	0.862
N303_00598	N303_00810	A0A091GD84	A0A091GAC0	Histone acetyltransferase KAT2A.	Ubiquitin carboxyl-terminal hydrolase.	0.992
N303_00598	N303_00925	A0A091GD84	A0A091FMP0	Histone acetyltransferase KAT2A.	Uncharacterized protein.	0.455
N303_00598	N303_00926	A0A091GD84	A0A091FIS0	Histone acetyltransferase KAT2A.	Multimerin-1.	0.455