11 items (Cuculus canorus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N303_14544	Baculoviral IAP repeat-containing protein 6. (4830 aa)
	N303_04342	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family. (140 aa)
	N303_02186	Polyubiquitin-C. (228 aa)
	N303_05088	E3 ubiquitin-protein ligase TRAF7. (661 aa)
	N303_02431	E3 ubiquitin-protein ligase TRIP12. (2037 aa)
	N303_08391	Ubiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family. (179 aa)
	N303_07374	Ubiquitin-like modifier-activating enzyme 6. (1029 aa)
	N303_04300	Ubiquitin-like 7. (379 aa)
	N303_02918	Ubiquitin-conjugating enzyme E2 variant 1. (221 aa)
	N303_08682	2'-5'-oligoadenylate synthase-like 1. (498 aa)
	N303_15554	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family. (126 aa)

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N303_02186	N303_02431	A0A091FRX5	A0A091GBZ1	Polyubiquitin-C.	E3 ubiquitin-protein ligase TRIP12.	0.996
N303_02186	N303_02918	A0A091FRX5	A0A091GKA4	Polyubiquitin-C.	Ubiquitin-conjugating enzyme E2 variant 1.	0.999
N303_02186	N303_04300	A0A091FRX5	A0A091GI39	Polyubiquitin-C.	Ubiquitin-like 7.	0.928
N303_02186	N303_04342	A0A091FRX5	A0A091FPN9	Polyubiquitin-C.	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	0.933
N303_02186	N303_05088	A0A091FRX5	A0A091G3I3	Polyubiquitin-C.	E3 ubiquitin-protein ligase TRAF7.	0.978
N303_02186	N303_07374	A0A091FRX5	A0A091GFJ4	Polyubiquitin-C.	Ubiquitin-like modifier-activating enzyme 6.	0.998
N303_02186	N303_08391	A0A091FRX5	A0A091GDD3	Polyubiquitin-C.	Ubiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.	0.996
N303_02186	N303_14544	A0A091FRX5	A0A091FJE8	Polyubiquitin-C.	Baculoviral IAP repeat-containing protein 6.	0.995
N303_02186	N303_15554	A0A091FRX5	A0A091H7H7	Polyubiquitin-C.	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.	0.933
N303_02431	N303_02186	A0A091GBZ1	A0A091FRX5	E3 ubiquitin-protein ligase TRIP12.	Polyubiquitin-C.	0.996
N303_02431	N303_02918	A0A091GBZ1	A0A091GKA4	E3 ubiquitin-protein ligase TRIP12.	Ubiquitin-conjugating enzyme E2 variant 1.	0.584
N303_02431	N303_04300	A0A091GBZ1	A0A091GI39	E3 ubiquitin-protein ligase TRIP12.	Ubiquitin-like 7.	0.908
N303_02431	N303_04342	A0A091GBZ1	A0A091FPN9	E3 ubiquitin-protein ligase TRIP12.	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	0.976
N303_02431	N303_05088	A0A091GBZ1	A0A091G3I3	E3 ubiquitin-protein ligase TRIP12.	E3 ubiquitin-protein ligase TRAF7.	0.874
N303_02431	N303_07374	A0A091GBZ1	A0A091GFJ4	E3 ubiquitin-protein ligase TRIP12.	Ubiquitin-like modifier-activating enzyme 6.	0.990
N303_02431	N303_08391	A0A091GBZ1	A0A091GDD3	E3 ubiquitin-protein ligase TRIP12.	Ubiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.	0.960
N303_02431	N303_08682	A0A091GBZ1	A0A091GMJ6	E3 ubiquitin-protein ligase TRIP12.	2'-5'-oligoadenylate synthase-like 1.	0.996
N303_02431	N303_14544	A0A091GBZ1	A0A091FJE8	E3 ubiquitin-protein ligase TRIP12.	Baculoviral IAP repeat-containing protein 6.	0.933
N303_02431	N303_15554	A0A091GBZ1	A0A091H7H7	E3 ubiquitin-protein ligase TRIP12.	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.	0.976
N303_02918	N303_02186	A0A091GKA4	A0A091FRX5	Ubiquitin-conjugating enzyme E2 variant 1.	Polyubiquitin-C.	0.999