35 items (Cuculus canorus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N303_12159	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (153 aa)
	N303_10979	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (126 aa)
	N303_07749	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (186 aa)
	N303_13669	40S ribosomal protein S28. (55 aa)
	N303_12606	Ribosome maturation protein SBDS. (165 aa)
	N303_11022	Eukaryotic translation initiation factor 2A. (584 aa)
	N303_06192	Uncharacterized protein. (216 aa)
	N303_09728	60S acidic ribosomal protein P0. (274 aa)
	N303_11602	60S ribosomal protein L5. (296 aa)
	N303_03651	X-ray repair cross-complementing protein 5. (720 aa)
	N303_03220	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	N303_00280	Midasin. (5599 aa)
	N303_14136	60S ribosomal protein L24. (156 aa)
	RPSA	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (296 aa)
	N303_14326	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	N303_01361	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (184 aa)
	N303_06357	Uncharacterized protein. (416 aa)
	N303_13467	40S ribosomal protein S27. (83 aa)
	N303_12446	Notchless protein 1. (449 aa)
	N303_05892	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (292 aa)
	N303_05088	E3 ubiquitin-protein ligase TRAF7. (661 aa)
	N303_14982	Periodic tryptophan protein 2. (875 aa)
	N303_15066	Mpv17-like 2; Belongs to the peroxisomal membrane protein PXMP2/4 family. (154 aa)
	N303_04576	Ribosome production factor 2. (304 aa)
	N303_13473	Putative ATP-dependent RNA helicase DHX30. (1163 aa)
	N303_15709	Ribosomal_S7 domain-containing protein. (215 aa)
	N303_01435	Eukaryotic translation initiation factor 6. (179 aa)
	N303_11689	Elongation factor Tu GTP-binding domain-containing protein 1. (1132 aa)
	N303_09110	Ribosome biogenesis protein BRX1. (297 aa)
	N303_02185	Putative ATP-dependent RNA helicase DHX37. (1110 aa)
	N303_05225	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family. (128 aa)
	N303_07095	Putative ribosomal RNA methyltransferase 2. (223 aa)
	N303_15284	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (146 aa)
	N303_08482	FAST kinase domain-containing protein 2. (529 aa)
	N303_12108	Uncharacterized protein. (202 aa)

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N303_00280	N303_01361	A0A091FQR9	A0A091FUN4	Midasin.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.798
N303_00280	N303_01435	A0A091FQR9	A0A091GBX7	Midasin.	Eukaryotic translation initiation factor 6.	0.669
N303_00280	N303_04576	A0A091FQR9	A0A091G9N8	Midasin.	Ribosome production factor 2.	0.590
N303_00280	N303_05088	A0A091FQR9	A0A091G3I3	Midasin.	E3 ubiquitin-protein ligase TRAF7.	0.430
N303_00280	N303_05892	A0A091FQR9	A0A091G1U5	Midasin.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.533
N303_00280	N303_11602	A0A091FQR9	A0A091FK89	Midasin.	60S ribosomal protein L5.	0.683
N303_00280	N303_12159	A0A091FQR9	A0A091GNK6	Midasin.	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.689
N303_00280	N303_12446	A0A091FQR9	A0A091FZY0	Midasin.	Notchless protein 1.	0.978
N303_00280	N303_14982	A0A091FQR9	A0A091G4Q6	Midasin.	Periodic tryptophan protein 2.	0.757
N303_01361	N303_00280	A0A091FUN4	A0A091FQR9	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Midasin.	0.798
N303_01361	N303_01435	A0A091FUN4	A0A091GBX7	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Eukaryotic translation initiation factor 6.	0.984
N303_01361	N303_03220	A0A091FUN4	A0A091FLC2	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.	0.932
N303_01361	N303_04576	A0A091FUN4	A0A091G9N8	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosome production factor 2.	0.997
N303_01361	N303_05225	A0A091FUN4	A0A091GG43	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	0.991
N303_01361	N303_05892	A0A091FUN4	A0A091G1U5	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.985
N303_01361	N303_06192	A0A091FUN4	A0A091H8E6	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized protein.	0.911
N303_01361	N303_06357	A0A091FUN4	A0A091FXY5	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized protein.	0.533
N303_01361	N303_07095	A0A091FUN4	A0A091GIQ9	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Putative ribosomal RNA methyltransferase 2.	0.732
N303_01361	N303_07749	A0A091FUN4	A0A091GZ82	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.981
N303_01361	N303_09110	A0A091FUN4	A0A091GC99	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosome biogenesis protein BRX1.	0.996