27 items (Cuculus canorus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N303_02779	Mediator of RNA polymerase II transcription subunit 28. (126 aa)
	N303_04792	Putative histone-lysine N-methyltransferase PRDM6. (441 aa)
	N303_05903	Transmembrane protein 119. (183 aa)
	N303_08497	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (1031 aa)
	N303_09128	Protein NOV. (237 aa)
	N303_06140	Putative lipid phosphate phosphatase PPAPDC3. (271 aa)
	N303_01090	Fibroblast growth factor receptor substrate 2. (120 aa)
	N303_03060	Homeobox protein Nkx-2.5. (297 aa)
	N303_09920	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (254 aa)
	N303_05763	RNA-binding protein with multiple splicing. (150 aa)
	N303_03558	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (691 aa)
	N303_13073	Class A basic helix-loop-helix protein 15. (160 aa)
	N303_13234	Dickkopf-related protein 1. (96 aa)
	N303_14478	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (151 aa)
	N303_00133	Transcription factor SOX-6. (789 aa)
	N303_09843	Homeobox domain-containing protein. (183 aa)
	N303_04647	Myocardin. (959 aa)
	N303_06861	Mitochondrial import receptor subunit TOM70. (501 aa)
	N303_02910	Nuclear factor of activated T-cells, cytoplasmic 2. (882 aa)
	N303_06813	Nuclear factor of activated T-cells, cytoplasmic 1. (900 aa)
	N303_12349	Nuclear factor of activated T-cells, cytoplasmic 3. (1057 aa)
	N303_08784	X-box-binding protein 1. (194 aa)
	N303_11746	Mothers against decapentaplegic homolog. (465 aa)
	N303_05830	Proepiregulin. (118 aa)
	N303_00174	Insulin-like growth factor II. (149 aa)
	N303_04465	Fibroblast growth factor receptor substrate 2. (508 aa)
	N303_13534	DNA (Cytosine-5)-methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (224 aa)

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N303_00174	N303_09920	A0A091FN27	A0A091GH83	Insulin-like growth factor II.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.686
N303_02910	N303_06813	A0A091FVK2	A0A091FUF8	Nuclear factor of activated T-cells, cytoplasmic 2.	Nuclear factor of activated T-cells, cytoplasmic 1.	0.896
N303_02910	N303_12349	A0A091FVK2	A0A091FU89	Nuclear factor of activated T-cells, cytoplasmic 2.	Nuclear factor of activated T-cells, cytoplasmic 3.	0.825
N303_03060	N303_04647	A0A091GHI2	A0A091FXF5	Homeobox protein Nkx-2.5.	Myocardin.	0.571
N303_04647	N303_03060	A0A091FXF5	A0A091GHI2	Myocardin.	Homeobox protein Nkx-2.5.	0.571
N303_06813	N303_02910	A0A091FUF8	A0A091FVK2	Nuclear factor of activated T-cells, cytoplasmic 1.	Nuclear factor of activated T-cells, cytoplasmic 2.	0.896
N303_08497	N303_11746	A0A091GMN4	A0A091FNY3	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Mothers against decapentaplegic homolog.	0.919
N303_09920	N303_00174	A0A091GH83	A0A091FN27	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Insulin-like growth factor II.	0.686
N303_11746	N303_08497	A0A091FNY3	A0A091GMN4	Mothers against decapentaplegic homolog.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.919
N303_12349	N303_02910	A0A091FU89	A0A091FVK2	Nuclear factor of activated T-cells, cytoplasmic 3.	Nuclear factor of activated T-cells, cytoplasmic 2.	0.825