(23 nodes) SNF2-like, N-terminal domain superfamily network (Cuculus canorus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N303_09200	DNA excision repair protein ERCC-6. (1503 aa)
	N303_06923	Chromodomain-helicase-DNA-binding protein 1-like. (851 aa)
	N303_07562	Putative global transcription activator SNF2L2. (1493 aa)
	N303_06871	Transcription termination factor 2. (1143 aa)
	N303_05260	Chromodomain-helicase-DNA-binding protein 1. (1813 aa)
	N303_15597	Helicase ARIP4. (1478 aa)
	N303_06731	Putative DNA repair and recombination protein RAD26-like. (682 aa)
	N303_14077	Chromodomain-helicase-DNA-binding protein 6. (2596 aa)
	N303_05628	Chromodomain-helicase-DNA-binding protein 5. (1783 aa)
	N303_03654	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (708 aa)
	N303_06819	E3 ubiquitin-protein ligase SHPRH. (1675 aa)
	N303_03882	Uncharacterized protein. (710 aa)
	N303_06503	DNA excision repair protein ERCC-6-like. (497 aa)
	N303_06768	annotation not available (958 aa)
	N303_03037	DNA annealing helicase and endonuclease ZRANB3. (1098 aa)
	N303_09624	Lymphoid-specific helicase. (790 aa)
	N303_15802	Chromodomain-helicase-DNA-binding protein 4. (1912 aa)
	N303_05961	Chromodomain-helicase-DNA-binding protein 2. (1792 aa)
	N303_07839	Transcriptional regulator ATRX. (2401 aa)
	N303_07825	Putative global transcription activator SNF2L1. (983 aa)
	N303_11740	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5. (958 aa)
	N303_02163	E1A-binding protein p400. (3107 aa)
	N303_09156	TATA-binding protein-associated factor 172. (1843 aa)

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N303_02163	N303_07825	A0A091FPD3	A0A091FLP0	E1A-binding protein p400.	Putative global transcription activator SNF2L1.	0.407
N303_02163	N303_11740	A0A091FPD3	A0A091FNX6	E1A-binding protein p400.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.	0.407
N303_03037	N303_03654	A0A091H4C3	A0A091G634	DNA annealing helicase and endonuclease ZRANB3.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	0.463
N303_03037	N303_03882	A0A091H4C3	A0A091G6J0	DNA annealing helicase and endonuclease ZRANB3.	Uncharacterized protein.	0.472
N303_03037	N303_06768	A0A091H4C3	A0A091G8P0	DNA annealing helicase and endonuclease ZRANB3.	annotation not available	0.477
N303_03037	N303_06871	A0A091H4C3	A0A091FVP2	DNA annealing helicase and endonuclease ZRANB3.	Transcription termination factor 2.	0.453
N303_03037	N303_07562	A0A091H4C3	A0A091FU08	DNA annealing helicase and endonuclease ZRANB3.	Putative global transcription activator SNF2L2.	0.457
N303_03037	N303_09156	A0A091H4C3	A0A091FPS6	DNA annealing helicase and endonuclease ZRANB3.	TATA-binding protein-associated factor 172.	0.461
N303_03654	N303_03037	A0A091G634	A0A091H4C3	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	DNA annealing helicase and endonuclease ZRANB3.	0.463
N303_03654	N303_06768	A0A091G634	A0A091G8P0	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	annotation not available	0.472
N303_03654	N303_06871	A0A091G634	A0A091FVP2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	Transcription termination factor 2.	0.456
N303_03654	N303_07562	A0A091G634	A0A091FU08	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	Putative global transcription activator SNF2L2.	0.467
N303_03654	N303_09156	A0A091G634	A0A091FPS6	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	TATA-binding protein-associated factor 172.	0.457
N303_03882	N303_03037	A0A091G6J0	A0A091H4C3	Uncharacterized protein.	DNA annealing helicase and endonuclease ZRANB3.	0.472
N303_03882	N303_06503	A0A091G6J0	A0A091G7A5	Uncharacterized protein.	DNA excision repair protein ERCC-6-like.	0.781
N303_03882	N303_06731	A0A091G6J0	A0A091G446	Uncharacterized protein.	Putative DNA repair and recombination protein RAD26-like.	0.753
N303_03882	N303_06768	A0A091G6J0	A0A091G8P0	Uncharacterized protein.	annotation not available	0.465
N303_03882	N303_06871	A0A091G6J0	A0A091FVP2	Uncharacterized protein.	Transcription termination factor 2.	0.490
N303_03882	N303_06923	A0A091G6J0	A0A091FS42	Uncharacterized protein.	Chromodomain-helicase-DNA-binding protein 1-like.	0.448
N303_03882	N303_07562	A0A091G6J0	A0A091FU08	Uncharacterized protein.	Putative global transcription activator SNF2L2.	0.471