28 items (Cuculus canorus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N303_11545	Ubiquitin-40S ribosomal protein S27a. (140 aa)
	N303_10724	CD2-associated protein. (642 aa)
	N303_00400	Hepatocyte growth factor-regulated tyrosine kinase substrate. (762 aa)
	N303_04170	Signal transducing adapter molecule 1. (531 aa)
	N303_15046	Epidermal growth factor receptor substrate 15-like 1. (882 aa)
	N303_07742	Tyrosine-protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class subfamily. (919 aa)
	N303_15712	Growth factor receptor-bound protein 2. (216 aa)
	N303_11730	Rho guanine nucleotide exchange factor 7. (779 aa)
	N303_14696	Probetacellulin. (123 aa)
	N303_04264	Protein sprouty 1. (287 aa)
	N303_01843	Pro-epidermal growth factor. (1251 aa)
	N303_01463	Receptor-type tyrosine-protein phosphatase T. (1389 aa)
	N303_03514	SH3 domain-containing kinase-binding protein 1. (658 aa)
	N303_01592	Receptor-type tyrosine-protein phosphatase mu. (1386 aa)
	N303_08792	Endophilin-A3. (352 aa)
	N303_12215	Cell division control protein 42. (174 aa)
	N303_11398	Signal transducing adapter molecule 2. (513 aa)
	N303_11321	E3 ubiquitin-protein ligase CBL. (902 aa)
	N303_03851	Epidermal growth factor receptor substrate 15. (896 aa)
	N303_05831	Amphiregulin. (146 aa)
	N303_05829	Epigen. (151 aa)
	N303_05830	Proepiregulin. (118 aa)
	N303_12390	Receptor-type tyrosine-protein phosphatase kappa. (1343 aa)
	N303_02186	Polyubiquitin-C. (228 aa)
	N303_04336	Proheparin-binding EGF-like growth factor. (135 aa)
	N303_09637	Protransforming growth factor alpha. (41 aa)
	N303_15414	Endophilin-A1. (338 aa)
	N303_12407	Protein sprouty 2. (309 aa)

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N303_00400	N303_01843	A0A091FYL6	A0A091GCX0	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Pro-epidermal growth factor.	0.591
N303_00400	N303_02186	A0A091FYL6	A0A091FRX5	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Polyubiquitin-C.	0.993
N303_00400	N303_03514	A0A091FYL6	A0A091GEM5	Hepatocyte growth factor-regulated tyrosine kinase substrate.	SH3 domain-containing kinase-binding protein 1.	0.627
N303_00400	N303_03851	A0A091FYL6	A0A091GS32	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Epidermal growth factor receptor substrate 15.	0.871
N303_00400	N303_04170	A0A091FYL6	A0A091FYS3	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Signal transducing adapter molecule 1.	0.995
N303_00400	N303_07742	A0A091FYL6	A0A091GAB7	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Tyrosine-protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class subfamily.	0.635
N303_00400	N303_10724	A0A091FYL6	A0A091FXK2	Hepatocyte growth factor-regulated tyrosine kinase substrate.	CD2-associated protein.	0.627
N303_00400	N303_11321	A0A091FYL6	A0A091GNK4	Hepatocyte growth factor-regulated tyrosine kinase substrate.	E3 ubiquitin-protein ligase CBL.	0.716
N303_00400	N303_11398	A0A091FYL6	A0A091GHH0	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Signal transducing adapter molecule 2.	0.991
N303_00400	N303_11545	A0A091FYL6	A0A091FV94	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Ubiquitin-40S ribosomal protein S27a.	0.972
N303_00400	N303_12215	A0A091FYL6	A0A091GHA5	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Cell division control protein 42.	0.561
N303_00400	N303_12407	A0A091FYL6	A0A091FJF1	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Protein sprouty 2.	0.628
N303_00400	N303_15046	A0A091FYL6	A0A091G5E5	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Epidermal growth factor receptor substrate 15-like 1.	0.871
N303_00400	N303_15712	A0A091FYL6	A0A091GAV5	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Growth factor receptor-bound protein 2.	0.656
N303_01463	N303_01843	A0A091GEB6	A0A091GCX0	Receptor-type tyrosine-protein phosphatase T.	Pro-epidermal growth factor.	0.409
N303_01463	N303_02186	A0A091GEB6	A0A091FRX5	Receptor-type tyrosine-protein phosphatase T.	Polyubiquitin-C.	0.460
N303_01463	N303_04170	A0A091GEB6	A0A091FYS3	Receptor-type tyrosine-protein phosphatase T.	Signal transducing adapter molecule 1.	0.420
N303_01463	N303_11321	A0A091GEB6	A0A091GNK4	Receptor-type tyrosine-protein phosphatase T.	E3 ubiquitin-protein ligase CBL.	0.533
N303_01463	N303_11398	A0A091GEB6	A0A091GHH0	Receptor-type tyrosine-protein phosphatase T.	Signal transducing adapter molecule 2.	0.420
N303_01463	N303_11545	A0A091GEB6	A0A091FV94	Receptor-type tyrosine-protein phosphatase T.	Ubiquitin-40S ribosomal protein S27a.	0.460