STRINGSTRING
N303_11545 N303_11545 N303_09243 N303_09243 N303_04072 N303_04072 N303_04378 N303_04378 N303_02186 N303_02186 N303_00210 N303_00210 N303_00602 N303_00602 N303_01279 N303_01279 N303_04938 N303_04938 N303_13473 N303_13473 N303_02302 N303_02302 N303_02203 N303_02203 N303_01984 N303_01984 N303_07372 N303_07372 N303_11004 N303_11004 N303_12050 N303_12050 N303_06062 N303_06062 N303_03760 N303_03760 N303_03083 N303_03083 N303_15336 N303_15336 N303_08928 N303_08928 N303_12048 N303_12048 N303_12046 N303_12046 N303_04597 N303_04597 N303_04939 N303_04939 N303_10989 N303_10989 N303_12049 N303_12049
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N303_11545Ubiquitin-40S ribosomal protein S27a. (140 aa)
N303_09243Nuclear factor NF-kappa-B p100 subunit. (859 aa)
N303_04072NF-kappa-B inhibitor-interacting Ras-like 1. (191 aa)
N303_04378Protein NLRC3. (1010 aa)
N303_02186Polyubiquitin-C. (228 aa)
N303_00210Interferon regulatory factor 3. (459 aa)
N303_00602NF-kappa-B inhibitor-interacting Ras-like 2. (186 aa)
N303_01279Putative ATP-dependent RNA helicase DHX57. (1337 aa)
N303_04938ATP-dependent RNA helicase A. (370 aa)
N303_13473Putative ATP-dependent RNA helicase DHX30. (1163 aa)
N303_02302Cyclic GMP-AMP synthase. (356 aa)
N303_02203Catenin beta-1. (777 aa)
N303_01984Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family. (683 aa)
N303_07372YTH domain-containing protein 1. (695 aa)
N303_11004Putative ATP-dependent RNA helicase DHX36. (910 aa)
N303_12050Keratin. (100 aa)
N303_06062E3 ubiquitin-protein ligase TRIM32. (649 aa)
N303_03760Myeloid differentiation primary response protein MyD88. (234 aa)
N303_03083Putative ATP-dependent RNA helicase DDX41. (600 aa)
N303_15336KxDL motif-containing protein 1. (176 aa)
N303_08928Leucine-rich repeat flightless-interacting protein 2. (704 aa)
N303_12048Keratin. (132 aa)
N303_12046Keratin. (59 aa)
N303_04597Leucine-rich repeat flightless-interacting protein 2. (570 aa)
N303_04939ATP-dependent RNA helicase A. (822 aa)
N303_10989Major facilitator superfamily domain-containing protein 1. (391 aa)
N303_12049Keratin. (129 aa)
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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