16 items (Cuculus canorus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N303_15336	KxDL motif-containing protein 1. (176 aa)
	N303_02918	Ubiquitin-conjugating enzyme E2 variant 1. (221 aa)
	N303_14995	Mitogen-activated protein kinase. (320 aa)
	N303_04620	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (545 aa)
	N303_05348	MAP kinase-activated protein kinase 2. (298 aa)
	N303_15602	MAP kinase-activated protein kinase 3; Belongs to the protein kinase superfamily. (387 aa)
	N303_11545	Ubiquitin-40S ribosomal protein S27a. (140 aa)
	N303_09946	Mitogen-activated protein kinase. (323 aa)
	N303_07231	Mitogen-activated protein kinase kinase kinase MLT. (791 aa)
	N303_00814	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily. (329 aa)
	N303_09922	TGF-beta-activated kinase 1 and MAP3K7-binding protein 1. (35 aa)
	N303_11457	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3. (679 aa)
	N303_06831	TGF-beta-activated kinase 1 and MAP3K7-binding protein 2. (698 aa)
	N303_00285	Mitogen-activated protein kinase kinase kinase 7. (615 aa)
	N303_10949	Nucleotide-binding oligomerization domain-containing protein 1. (927 aa)
	N303_02186	Polyubiquitin-C. (228 aa)

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N303_00285	N303_00814	A0A091FLF6	A0A091GXT4	Mitogen-activated protein kinase kinase kinase 7.	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily.	0.964
N303_00285	N303_02186	A0A091FLF6	A0A091FRX5	Mitogen-activated protein kinase kinase kinase 7.	Polyubiquitin-C.	0.730
N303_00285	N303_02918	A0A091FLF6	A0A091GKA4	Mitogen-activated protein kinase kinase kinase 7.	Ubiquitin-conjugating enzyme E2 variant 1.	0.599
N303_00285	N303_04620	A0A091FLF6	A0A091GHS8	Mitogen-activated protein kinase kinase kinase 7.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.996
N303_00285	N303_06831	A0A091FLF6	A0A091FJD9	Mitogen-activated protein kinase kinase kinase 7.	TGF-beta-activated kinase 1 and MAP3K7-binding protein 2.	0.996
N303_00285	N303_09922	A0A091FLF6	A0A091H636	Mitogen-activated protein kinase kinase kinase 7.	TGF-beta-activated kinase 1 and MAP3K7-binding protein 1.	0.996
N303_00285	N303_09946	A0A091FLF6	A0A091FUL7	Mitogen-activated protein kinase kinase kinase 7.	Mitogen-activated protein kinase.	0.877
N303_00285	N303_10949	A0A091FLF6	A0A091FQ96	Mitogen-activated protein kinase kinase kinase 7.	Nucleotide-binding oligomerization domain-containing protein 1.	0.717
N303_00285	N303_11457	A0A091FLF6	A0A091FGN7	Mitogen-activated protein kinase kinase kinase 7.	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3.	0.991
N303_00285	N303_11545	A0A091FLF6	A0A091FV94	Mitogen-activated protein kinase kinase kinase 7.	Ubiquitin-40S ribosomal protein S27a.	0.706
N303_00285	N303_14995	A0A091FLF6	A0A091GIN3	Mitogen-activated protein kinase kinase kinase 7.	Mitogen-activated protein kinase.	0.873
N303_00814	N303_00285	A0A091GXT4	A0A091FLF6	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase kinase kinase 7.	0.964
N303_00814	N303_04620	A0A091GXT4	A0A091GHS8	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.739
N303_00814	N303_05348	A0A091GXT4	A0A091GAL8	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily.	MAP kinase-activated protein kinase 2.	0.877
N303_00814	N303_06831	A0A091GXT4	A0A091FJD9	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily.	TGF-beta-activated kinase 1 and MAP3K7-binding protein 2.	0.844
N303_00814	N303_07231	A0A091GXT4	A0A091FSW6	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase kinase kinase MLT.	0.930
N303_00814	N303_09922	A0A091GXT4	A0A091H636	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily.	TGF-beta-activated kinase 1 and MAP3K7-binding protein 1.	0.876
N303_00814	N303_09946	A0A091GXT4	A0A091FUL7	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase.	0.983
N303_00814	N303_11457	A0A091GXT4	A0A091FGN7	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily.	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3.	0.844
N303_00814	N303_14995	A0A091GXT4	A0A091GIN3	Dual specificity mitogen-activated protein kinase kinase 3; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase.	0.982