STRINGSTRING
N303_03555 N303_03555 N303_06337 N303_06337 N303_15270 N303_15270 N303_06149 N303_06149 N303_09899 N303_09899 N303_09073 N303_09073 N303_12249 N303_12249 N303_04822 N303_04822 N303_13229 N303_13229 N303_13792 N303_13792 N303_10494 N303_10494 N303_00761 N303_00761 N303_03647 N303_03647 N303_09037 N303_09037 N303_06295 N303_06295 N303_00152 N303_00152 N303_00201 N303_00201 N303_09577 N303_09577 N303_03998 N303_03998 N303_11217 N303_11217 N303_10294 N303_10294 N303_08333 N303_08333 N303_08726 N303_08726 N303_10486 N303_10486 N303_02361 N303_02361 N303_01982 N303_01982 N303_01993 N303_01993
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N303_03555TATA-box-binding protein. (299 aa)
N303_06337DNA-directed RNA polymerases I, II, and III subunit RPABC4. (55 aa)
N303_15270DNA-directed RNA polymerases I, II, and III subunit RPABC1. (192 aa)
N303_06149Transcription termination factor 1. (348 aa)
N303_09899DNA-directed RNA polymerases I, II, and III subunit RPABC2. (136 aa)
N303_09073DNA-directed RNA polymerases I and III subunit RPAC1. (323 aa)
N303_12249DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1020 aa)
N303_04822Cyclin-H; Belongs to the cyclin family. (312 aa)
N303_13229General transcription factor IIH subunit 5. (71 aa)
N303_13792TATA box-binding protein-associated factor RNA polymerase I subunit A. (412 aa)
N303_10494TATA box-binding protein-associated factor RNA polymerase I subunit B. (573 aa)
N303_00761CDK-activating kinase assembly factor MAT1. (278 aa)
N303_03647TFIIH basal transcription factor complex helicase XPB subunit. (705 aa)
N303_09037Nucleolar transcription factor 1. (758 aa)
N303_06295DNA-directed RNA polymerase I subunit RPA43. (249 aa)
N303_00152General transcription factor IIH subunit 1. (548 aa)
N303_00201DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
N303_09577DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1669 aa)
N303_03998TATA-box-binding protein. (181 aa)
N303_11217TATA box-binding protein-associated factor, RNA polymerase I, subunit C. (278 aa)
N303_10294DNA-directed RNA polymerases I, II, and III subunit RPABC3. (142 aa)
N303_08333General transcription factor IIH subunit. (395 aa)
N303_08726General transcription factor IIH subunit 3. (314 aa)
N303_10486Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
N303_02361DNA-directed RNA polymerase I subunit RPA43. (247 aa)
N303_01982DNA-directed RNA polymerase I subunit RPA43. (248 aa)
N303_01993TATA box-binding protein-associated factor RNA polymerase I subunit D. (207 aa)
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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