STRINGSTRING
Lreu_0771 Lreu_0771 Lreu_0772 Lreu_0772 Lreu_0773 Lreu_0773 Lreu_0774 Lreu_0774 Lreu_0775 Lreu_0775 Lreu_0776 Lreu_0776 rnhB rnhB Lreu_0778 Lreu_0778 Lreu_0780 Lreu_0780 plsY plsY Lreu_0932 Lreu_0932 Lreu_0933 Lreu_0933 Lreu_0934 Lreu_0934 Lreu_1150 Lreu_1150 Lreu_1156 Lreu_1156 smc smc rnc rnc acpP-2 acpP-2 plsX plsX recG recG Lreu_1163 Lreu_1163 Lreu_1164 Lreu_1164 Lreu_1166 Lreu_1166 Lreu_1167 Lreu_1167 rsgA rsgA Lreu_1169 Lreu_1169 Lreu_1170 Lreu_1170 Lreu_1171 Lreu_1171 fmt fmt priA priA Lreu_1174 Lreu_1174 Lreu_1177 Lreu_1177 Lreu_1178 Lreu_1178 argR-2 argR-2 Lreu_1180 Lreu_1180 Lreu_1181 Lreu_1181 xseB xseB xseA xseA nusB nusB Lreu_1186 Lreu_1186 Lreu_1187 Lreu_1187 Lreu_1188 Lreu_1188 Lreu_1189 Lreu_1189 Lreu_1191 Lreu_1191 coaA coaA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Lreu_0771TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein. (214 aa)
Lreu_0772TIGRFAM: degV family protein; PFAM: DegV family protein. (280 aa)
Lreu_0773PFAM: lipolytic protein, G-D-S-L family. (308 aa)
Lreu_0774Uncharacterized protein. (200 aa)
Lreu_0775PFAM: protein of unknown function DUF1250; Belongs to the UPF0346 family. (73 aa)
Lreu_0776Ras superfamily GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (290 aa)
rnhBRNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (256 aa)
Lreu_0778TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein. (291 aa)
Lreu_0780PFAM: Aldose 1-epimerase. (292 aa)
plsYAcyl-phosphate glycerol-3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. (209 aa)
Lreu_0932PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein. (560 aa)
Lreu_0933TIGRFAM: degV family protein; PFAM: DegV family protein. (292 aa)
Lreu_0934Hypothetical protein. (196 aa)
Lreu_1150Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3. (476 aa)
Lreu_1156Putative helix-turn-helix protein, YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. (113 aa)
smcCondensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1187 aa)
rncRNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (233 aa)
acpP-2Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (84 aa)
plsXPhosphate:acyl-[acyl carrier protein] acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA. (343 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (678 aa)
Lreu_1163PFAM: Dak phosphatase. (569 aa)
Lreu_1164PFAM: protein of unknown function DUF322. (120 aa)
Lreu_1166TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region. (216 aa)
Lreu_1167PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (217 aa)
rsgARibosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (296 aa)
Lreu_1169PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase. (634 aa)
Lreu_1170PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein. (246 aa)
Lreu_1171Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (449 aa)
fmtmethionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (317 aa)
priAReplication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (809 aa)
Lreu_1174Phosphopantothenoylcysteine decarboxylase / Phosphopantothenate-cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (401 aa)
Lreu_1177Hypothetical protein. (110 aa)
Lreu_1178DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. (559 aa)
argR-2Transcriptional regulator, ArgR family; Regulates arginine biosynthesis genes. (150 aa)
Lreu_1180TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein. (273 aa)
Lreu_1181Farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. (290 aa)
xseBExodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (93 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (445 aa)
nusBNusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (138 aa)
Lreu_1186PFAM: protein of unknown function DUF322. (145 aa)
Lreu_1187Hypothetical protein. (224 aa)
Lreu_1188Peptidase M24; PFAM: creatinase; peptidase M24. (358 aa)
Lreu_1189Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (235 aa)
Lreu_1191PFAM: protein of unknown function DUF464. (107 aa)
coaATIGRFAM: pantothenate kinase; PFAM: phosphoribulokinase/uridine kinase. (307 aa)
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
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