(35 nodes) Mixed, incl. Fatty acid biosynthesis, and Cytochrome P450 - arranged by substrate type network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_005663	Piso0_005663 protein. (516 aa)
	Piso0_005748	Piso0_005748 protein. (342 aa)
	Piso0_004833	Piso0_004833 protein. (256 aa)
	Piso0_005255	Piso0_005255 protein. (2304 aa)
	Piso0_005563-2	Piso0_005563 protein. (505 aa)
	Piso0_005663-2	Piso0_005663 protein. (517 aa)
	Piso0_005665-2	Piso0_005665 protein. (649 aa)
	Piso0_005748-2	Piso0_005748 protein. (342 aa)
	Piso0_004833-2	Piso0_004833 protein. (256 aa)
	Piso0_003815	Piso0_003815 protein. (978 aa)
	Piso0_004491	Piso0_004491 protein. (384 aa)
	Piso0_003853	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (115 aa)
	Piso0_002115	Piso0_002115 protein. (254 aa)
	Piso0_002244	Piso0_002244 protein. (1249 aa)
	Piso0_002729	Piso0_002729 protein. (350 aa)
	Piso0_001229	Piso0_001229 protein. (254 aa)
	Piso0_002115-2	Piso0_002115 protein. (252 aa)
	Piso0_002684-2	Piso0_002684 protein. (321 aa)
	Piso0_002729-2	Piso0_002729 protein. (354 aa)
	Piso0_003029	Piso0_003029 protein. (560 aa)
	Piso0_003053	3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier-protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl- [acyl-carrier-protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier- protein] dehydratase. (2093 aa)
	Piso0_003113	Piso0_003113 protein. (286 aa)
	Piso0_002982	3-oxoacyl-[acyl-carrier-protein] reductase. (1883 aa)
	Piso0_001229-2	Piso0_001229 protein. (254 aa)
	Piso0_001674-2	Piso0_001674 protein. (630 aa)
	Piso0_000688	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (438 aa)
	Piso0_000756	Piso0_000756 protein. (1550 aa)
	Piso0_000688-2	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (441 aa)
	Piso0_000756-2	Piso0_000756 protein. (1550 aa)
	Piso0_000175	Piso0_000175 protein. (289 aa)
	Piso0_000199	Piso0_000199 protein. (1398 aa)
	Piso0_000527	Piso0_000527 protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (247 aa)
	Piso0_000199-2	Piso0_000199 protein. (1398 aa)
	Piso0_000373	Piso0_000373 protein. (915 aa)
	Piso0_000392	Piso0_000392 protein. (327 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000175	Piso0_000199	G8YTA3	G8YTC5	Piso0_000175 protein.	Piso0_000199 protein.	0.528
Piso0_000175	Piso0_000199-2	G8YTA3	G8YUS9	Piso0_000175 protein.	Piso0_000199 protein.	0.528
Piso0_000175	Piso0_000688	G8YTA3	G8YPS7	Piso0_000175 protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.610
Piso0_000175	Piso0_000688-2	G8YTA3	G8YR88	Piso0_000175 protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.610
Piso0_000175	Piso0_000756	G8YTA3	G8YPZ2	Piso0_000175 protein.	Piso0_000756 protein.	0.510
Piso0_000175	Piso0_000756-2	G8YTA3	G8YRF4	Piso0_000175 protein.	Piso0_000756 protein.	0.510
Piso0_000175	Piso0_001229	G8YTA3	G8YDT2	Piso0_000175 protein.	Piso0_001229 protein.	0.510
Piso0_000175	Piso0_001229-2	G8YTA3	G8YML4	Piso0_000175 protein.	Piso0_001229 protein.	0.509
Piso0_000175	Piso0_002244	G8YTA3	G8YC34	Piso0_000175 protein.	Piso0_002244 protein.	0.401
Piso0_000175	Piso0_002729	G8YTA3	G8YDC8	Piso0_000175 protein.	Piso0_002729 protein.	0.877
Piso0_000175	Piso0_002729-2	G8YTA3	G8YFT7	Piso0_000175 protein.	Piso0_002729 protein.	0.877
Piso0_000175	Piso0_003029	G8YTA3	G8YGZ9	Piso0_000175 protein.	Piso0_003029 protein.	0.401
Piso0_000175	Piso0_003113	G8YTA3	G8YH80	Piso0_000175 protein.	Piso0_003113 protein.	0.599
Piso0_000175	Piso0_003815	G8YTA3	G8Y8D7	Piso0_000175 protein.	Piso0_003815 protein.	0.510
Piso0_000175	Piso0_003853	G8YTA3	G8Y9P8	Piso0_000175 protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.524
Piso0_000175	Piso0_004491	G8YTA3	G8Y8Y0	Piso0_000175 protein.	Piso0_004491 protein.	0.495
Piso0_000175	Piso0_005255	G8YTA3	G8Y1P2	Piso0_000175 protein.	Piso0_005255 protein.	0.450
Piso0_000175	Piso0_005563-2	G8YTA3	G8Y2B2	Piso0_000175 protein.	Piso0_005563 protein.	0.455
Piso0_000175	Piso0_005663	G8YTA3	G8XZL5	Piso0_000175 protein.	Piso0_005663 protein.	0.401
Piso0_000175	Piso0_005663-2	G8YTA3	G8Y2K8	Piso0_000175 protein.	Piso0_005663 protein.	0.401