(16 nodes) Mixed, incl. AMP-binding enzyme, C-terminal domain superfamily, and Acyl transferase network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_003815	Piso0_003815 protein. (978 aa)
	Piso0_003853	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (115 aa)
	Piso0_002244	Piso0_002244 protein. (1249 aa)
	Piso0_002729	Piso0_002729 protein. (350 aa)
	Piso0_001229	Piso0_001229 protein. (254 aa)
	Piso0_002684-2	Piso0_002684 protein. (321 aa)
	Piso0_002729-2	Piso0_002729 protein. (354 aa)
	Piso0_003029	Piso0_003029 protein. (560 aa)
	Piso0_001674-2	Piso0_001674 protein. (630 aa)
	Piso0_000688	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (438 aa)
	Piso0_000756	Piso0_000756 protein. (1550 aa)
	Piso0_000756-2	Piso0_000756 protein. (1550 aa)
	Piso0_000199	Piso0_000199 protein. (1398 aa)
	Piso0_000199-2	Piso0_000199 protein. (1398 aa)
	Piso0_000373	Piso0_000373 protein. (915 aa)
	Piso0_000392	Piso0_000392 protein. (327 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000199	Piso0_000373	G8YTC5	G8YV96	Piso0_000199 protein.	Piso0_000373 protein.	0.528
Piso0_000199	Piso0_000392	G8YTC5	G8YVB5	Piso0_000199 protein.	Piso0_000392 protein.	0.684
Piso0_000199	Piso0_000688	G8YTC5	G8YPS7	Piso0_000199 protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.563
Piso0_000199	Piso0_000756	G8YTC5	G8YPZ2	Piso0_000199 protein.	Piso0_000756 protein.	0.849
Piso0_000199	Piso0_000756-2	G8YTC5	G8YRF4	Piso0_000199 protein.	Piso0_000756 protein.	0.849
Piso0_000199	Piso0_001229	G8YTC5	G8YDT2	Piso0_000199 protein.	Piso0_001229 protein.	0.525
Piso0_000199	Piso0_001674-2	G8YTC5	G8YNS9	Piso0_000199 protein.	Piso0_001674 protein.	0.684
Piso0_000199	Piso0_002244	G8YTC5	G8YC34	Piso0_000199 protein.	Piso0_002244 protein.	0.685
Piso0_000199	Piso0_002684-2	G8YTC5	G8YFP6	Piso0_000199 protein.	Piso0_002684 protein.	0.832
Piso0_000199	Piso0_002729	G8YTC5	G8YDC8	Piso0_000199 protein.	Piso0_002729 protein.	0.887
Piso0_000199	Piso0_002729-2	G8YTC5	G8YFT7	Piso0_000199 protein.	Piso0_002729 protein.	0.887
Piso0_000199	Piso0_003029	G8YTC5	G8YGZ9	Piso0_000199 protein.	Piso0_003029 protein.	0.685
Piso0_000199	Piso0_003815	G8YTC5	G8Y8D7	Piso0_000199 protein.	Piso0_003815 protein.	0.862
Piso0_000199	Piso0_003853	G8YTC5	G8Y9P8	Piso0_000199 protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.949
Piso0_000199-2	Piso0_000373	G8YUS9	G8YV96	Piso0_000199 protein.	Piso0_000373 protein.	0.528
Piso0_000199-2	Piso0_000392	G8YUS9	G8YVB5	Piso0_000199 protein.	Piso0_000392 protein.	0.684
Piso0_000199-2	Piso0_000688	G8YUS9	G8YPS7	Piso0_000199 protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.563
Piso0_000199-2	Piso0_000756	G8YUS9	G8YPZ2	Piso0_000199 protein.	Piso0_000756 protein.	0.849
Piso0_000199-2	Piso0_000756-2	G8YUS9	G8YRF4	Piso0_000199 protein.	Piso0_000756 protein.	0.849
Piso0_000199-2	Piso0_001229	G8YUS9	G8YDT2	Piso0_000199 protein.	Piso0_001229 protein.	0.525