(19 nodes) Mixed, incl. Gamma-tubulin small complex, and PPR repeat network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_005523	Piso0_005523 protein. (725 aa)
	Piso0_005633	Piso0_005633 protein. (1167 aa)
	Piso0_005844	Piso0_005844 protein. (922 aa)
	Piso0_005238	Spindle pole body component. (857 aa)
	Piso0_005523-2	Piso0_005523 protein. (725 aa)
	Piso0_005633-2	Piso0_005633 protein. (1167 aa)
	Piso0_005844-2	Piso0_005844 protein. (919 aa)
	Piso0_005845-2	Tafazzin family protein; Belongs to the taffazin family. (408 aa)
	Piso0_005238-2	Spindle pole body component. (857 aa)
	Piso0_001952	Piso0_001952 protein. (668 aa)
	Piso0_002491	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (488 aa)
	Piso0_002722	Spindle pole body component. (861 aa)
	Piso0_002491-2	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (488 aa)
	Piso0_002722-2	Spindle pole body component. (861 aa)
	Piso0_003405	Piso0_003405 protein. (680 aa)
	Piso0_001952-2	Piso0_001952 protein. (657 aa)
	Piso0_000936	Piso0_000936 protein. (263 aa)
	Piso0_000755-2	Piso0_000755 protein. (775 aa)
	Piso0_000511	Piso0_000511 protein. (195 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000511	Piso0_000936	G8YVM5	G8YQG7	Piso0_000511 protein.	Piso0_000936 protein.	0.518
Piso0_000511	Piso0_002491	G8YVM5	G8YCR6	Piso0_000511 protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.733
Piso0_000511	Piso0_002491-2	G8YVM5	G8YF67	Piso0_000511 protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.733
Piso0_000511	Piso0_002722	G8YVM5	G8YDC2	Piso0_000511 protein.	Spindle pole body component.	0.704
Piso0_000511	Piso0_002722-2	G8YVM5	G8YFT0	Piso0_000511 protein.	Spindle pole body component.	0.704
Piso0_000511	Piso0_005238	G8YVM5	G8Y1M6	Piso0_000511 protein.	Spindle pole body component.	0.754
Piso0_000511	Piso0_005238-2	G8YVM5	G8Y4K4	Piso0_000511 protein.	Spindle pole body component.	0.754
Piso0_000511	Piso0_005844	G8YVM5	G8Y037	Piso0_000511 protein.	Piso0_005844 protein.	0.461
Piso0_000511	Piso0_005845-2	G8YVM5	G8Y328	Piso0_000511 protein.	Tafazzin family protein; Belongs to the taffazin family.	0.461
Piso0_000755-2	Piso0_000936	G8YRF3	G8YQG7	Piso0_000755 protein.	Piso0_000936 protein.	0.518
Piso0_000755-2	Piso0_002491	G8YRF3	G8YCR6	Piso0_000755 protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.733
Piso0_000755-2	Piso0_002491-2	G8YRF3	G8YF67	Piso0_000755 protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.733
Piso0_000755-2	Piso0_002722	G8YRF3	G8YDC2	Piso0_000755 protein.	Spindle pole body component.	0.704
Piso0_000755-2	Piso0_002722-2	G8YRF3	G8YFT0	Piso0_000755 protein.	Spindle pole body component.	0.704
Piso0_000755-2	Piso0_003405	G8YRF3	G8YIZ7	Piso0_000755 protein.	Piso0_003405 protein.	0.426
Piso0_000755-2	Piso0_005238	G8YRF3	G8Y1M6	Piso0_000755 protein.	Spindle pole body component.	0.754
Piso0_000755-2	Piso0_005238-2	G8YRF3	G8Y4K4	Piso0_000755 protein.	Spindle pole body component.	0.754
Piso0_000755-2	Piso0_005844	G8YRF3	G8Y037	Piso0_000755 protein.	Piso0_005844 protein.	0.461
Piso0_000755-2	Piso0_005845-2	G8YRF3	G8Y328	Piso0_000755 protein.	Tafazzin family protein; Belongs to the taffazin family.	0.461
Piso0_000936	Piso0_000511	G8YQG7	G8YVM5	Piso0_000936 protein.	Piso0_000511 protein.	0.518