(37 nodes) snoRNA binding network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_004931	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1044 aa)
	Piso0_002149-2	Piso0_002149 protein. (647 aa)
	Piso0_002555-2	Piso0_002555 protein. (859 aa)
	Piso0_002591	Piso0_002591 protein. (581 aa)
	Piso0_002555	Piso0_002555 protein. (859 aa)
	Piso0_002149	Piso0_002149 protein. (646 aa)
	Piso0_004203	Piso0_004203 protein. (534 aa)
	Piso0_004595	Piso0_004595 protein. (1176 aa)
	Piso0_004375	Piso0_004375 protein. (697 aa)
	Piso0_004369	Piso0_004369 protein. (225 aa)
	Piso0_004931-2	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1044 aa)
	Piso0_005887-2	Piso0_005887 protein. (1840 aa)
	Piso0_005859-2	Piso0_005859 protein. (503 aa)
	Piso0_005822-2	Piso0_005822 protein. (183 aa)
	Piso0_002783	Piso0_002783 protein. (972 aa)
	Piso0_005887	Piso0_005887 protein. (1840 aa)
	Piso0_005859	Piso0_005859 protein. (502 aa)
	Piso0_002591-2	Piso0_002591 protein. (580 aa)
	Piso0_002783-2	Piso0_002783 protein. (972 aa)
	Piso0_003621	Piso0_003621 protein. (795 aa)
	Piso0_003248	Piso0_003248 protein. (429 aa)
	Piso0_003288	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (154 aa)
	Piso0_001368	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (749 aa)
	Piso0_001740	Piso0_001740 protein. (378 aa)
	Piso0_001330	Piso0_001330 protein. (771 aa)
	Piso0_001330-2	Piso0_001330 protein. (771 aa)
	Piso0_001368-2	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (748 aa)
	Piso0_001740-2	Piso0_001740 protein. (378 aa)
	Piso0_000684	Piso0_000684 protein. (804 aa)
	Piso0_000734	Piso0_000734 protein. (452 aa)
	Piso0_000684-2	Piso0_000684 protein. (803 aa)
	Piso0_000734-2	Piso0_000734 protein. (469 aa)
	Piso0_000541	Piso0_000541 protein. (337 aa)
	Piso0_001102	Piso0_001102 protein. (1712 aa)
	Piso0_000971	Piso0_000971 protein. (513 aa)
	Piso0_000958	Piso0_000958 protein. (519 aa)
	Piso0_005822	Piso0_005822 protein. (183 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000541	Piso0_000734	G8YVQ2	G8YPX1	Piso0_000541 protein.	Piso0_000734 protein.	0.511
Piso0_000541	Piso0_000734-2	G8YVQ2	G8YRD3	Piso0_000541 protein.	Piso0_000734 protein.	0.511
Piso0_000541	Piso0_000958	G8YVQ2	G8YS00	Piso0_000541 protein.	Piso0_000958 protein.	0.952
Piso0_000541	Piso0_003288	G8YVQ2	G8YHP9	Piso0_000541 protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.400
Piso0_000684	Piso0_000734	G8YPS3	G8YPX1	Piso0_000684 protein.	Piso0_000734 protein.	0.983
Piso0_000684	Piso0_000734-2	G8YPS3	G8YRD3	Piso0_000684 protein.	Piso0_000734 protein.	0.983
Piso0_000684	Piso0_000958	G8YPS3	G8YS00	Piso0_000684 protein.	Piso0_000958 protein.	0.996
Piso0_000684	Piso0_000971	G8YPS3	G8YS13	Piso0_000684 protein.	Piso0_000971 protein.	0.991
Piso0_000684	Piso0_001102	G8YPS3	G8YSE2	Piso0_000684 protein.	Piso0_001102 protein.	0.999
Piso0_000684	Piso0_001330	G8YPS3	G8YMG6	Piso0_000684 protein.	Piso0_001330 protein.	0.858
Piso0_000684	Piso0_001330-2	G8YPS3	G8YMV8	Piso0_000684 protein.	Piso0_001330 protein.	0.858
Piso0_000684	Piso0_001368	G8YPS3	G8YKL2	Piso0_000684 protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.941
Piso0_000684	Piso0_001368-2	G8YPS3	G8YMZ3	Piso0_000684 protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.941
Piso0_000684	Piso0_001740	G8YPS3	G8YLL2	Piso0_000684 protein.	Piso0_001740 protein.	0.878
Piso0_000684	Piso0_001740-2	G8YPS3	G8YNZ0	Piso0_000684 protein.	Piso0_001740 protein.	0.878
Piso0_000684	Piso0_002555	G8YPS3	G8YCX7	Piso0_000684 protein.	Piso0_002555 protein.	0.990
Piso0_000684	Piso0_002555-2	G8YPS3	G8YFC8	Piso0_000684 protein.	Piso0_002555 protein.	0.990
Piso0_000684	Piso0_002591	G8YPS3	G8YD10	Piso0_000684 protein.	Piso0_002591 protein.	0.989
Piso0_000684	Piso0_002591-2	G8YPS3	G8YFG3	Piso0_000684 protein.	Piso0_002591 protein.	0.989
Piso0_000684	Piso0_002783	G8YPS3	G8YDH9	Piso0_000684 protein.	Piso0_002783 protein.	0.969