(21 nodes) Invasive filamentous growth network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_004901	Piso0_004901 protein. (316 aa)
	Piso0_005900	Piso0_005900 protein. (454 aa)
	Piso0_000449	Piso0_000449 protein. (435 aa)
	Piso0_000332	Piso0_000332 protein. (781 aa)
	Piso0_000968	Piso0_000968 protein. (440 aa)
	Piso0_001697	Piso0_001697 protein. (191 aa)
	Piso0_005428	Piso0_005428 protein. (714 aa)
	Piso0_005436	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (372 aa)
	Piso0_005682	Piso0_005682 protein. (263 aa)
	Piso0_005724	Piso0_005724 protein. (1275 aa)
	Piso0_003123	Piso0_003123 protein. (853 aa)
	Piso0_003354	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (657 aa)
	Piso0_002825-2	Piso0_002825 protein. (687 aa)
	Piso0_002825	Piso0_002825 protein. (687 aa)
	Piso0_004417	Piso0_004417 protein; Belongs to the PI3/PI4-kinase family. (1894 aa)
	Piso0_005436-2	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (372 aa)
	Piso0_005428-2	Piso0_005428 protein. (714 aa)
	Piso0_004901-2	Piso0_004901 protein. (316 aa)
	Piso0_005900-2	Piso0_005900 protein. (453 aa)
	Piso0_005724-2	Piso0_005724 protein. (1187 aa)
	Piso0_005682-2	Piso0_005682 protein. (263 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000332	Piso0_000449	G8YTP8	G8YU10	Piso0_000332 protein.	Piso0_000449 protein.	0.795
Piso0_000332	Piso0_001697	G8YTP8	G8YNV2	Piso0_000332 protein.	Piso0_001697 protein.	0.935
Piso0_000332	Piso0_005436	G8YTP8	G8XZ05	Piso0_000332 protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.843
Piso0_000332	Piso0_005436-2	G8YTP8	G8Y534	Piso0_000332 protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.843
Piso0_000332	Piso0_005724	G8YTP8	G8XZS2	Piso0_000332 protein.	Piso0_005724 protein.	0.416
Piso0_000332	Piso0_005724-2	G8YTP8	G8Y2R4	Piso0_000332 protein.	Piso0_005724 protein.	0.416
Piso0_000449	Piso0_000332	G8YU10	G8YTP8	Piso0_000449 protein.	Piso0_000332 protein.	0.795
Piso0_000449	Piso0_001697	G8YU10	G8YNV2	Piso0_000449 protein.	Piso0_001697 protein.	0.811
Piso0_000449	Piso0_005436	G8YU10	G8XZ05	Piso0_000449 protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.801
Piso0_000449	Piso0_005436-2	G8YU10	G8Y534	Piso0_000449 protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.801
Piso0_000449	Piso0_005900	G8YU10	G8Y091	Piso0_000449 protein.	Piso0_005900 protein.	0.916
Piso0_000449	Piso0_005900-2	G8YU10	G8Y380	Piso0_000449 protein.	Piso0_005900 protein.	0.916
Piso0_001697	Piso0_000332	G8YNV2	G8YTP8	Piso0_001697 protein.	Piso0_000332 protein.	0.935
Piso0_001697	Piso0_000449	G8YNV2	G8YU10	Piso0_001697 protein.	Piso0_000449 protein.	0.811
Piso0_001697	Piso0_005428	G8YNV2	G8XZ00	Piso0_001697 protein.	Piso0_005428 protein.	0.681
Piso0_001697	Piso0_005428-2	G8YNV2	G8Y529	Piso0_001697 protein.	Piso0_005428 protein.	0.681
Piso0_001697	Piso0_005436	G8YNV2	G8XZ05	Piso0_001697 protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.723
Piso0_001697	Piso0_005436-2	G8YNV2	G8Y534	Piso0_001697 protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.723
Piso0_001697	Piso0_005724	G8YNV2	G8XZS2	Piso0_001697 protein.	Piso0_005724 protein.	0.664
Piso0_001697	Piso0_005724-2	G8YNV2	G8Y2R4	Piso0_001697 protein.	Piso0_005724 protein.	0.664