(23 nodes) Cell septum network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_001453-2	Piso0_001453 protein. (1035 aa)
	Piso0_000132-2	Piso0_000132 protein. (1091 aa)
	Piso0_000044-2	Piso0_000044 protein. (850 aa)
	Piso0_000132	Piso0_000132 protein. (1091 aa)
	Piso0_000044	Piso0_000044 protein. (827 aa)
	Piso0_000879-2	Piso0_000879 protein. (208 aa)
	Piso0_000738-2	Piso0_000738 protein. (1021 aa)
	Piso0_000879	Piso0_000879 protein. (208 aa)
	Piso0_000738	Piso0_000738 protein. (1022 aa)
	Piso0_001697	Piso0_001697 protein. (191 aa)
	Piso0_005516	Piso0_005516 protein. (829 aa)
	Piso0_005546	Piso0_005546 protein. (1135 aa)
	Piso0_005627	Piso0_005627 protein. (1747 aa)
	Piso0_005516-2	Piso0_005516 protein. (829 aa)
	Piso0_005546-2	Piso0_005546 protein. (1135 aa)
	Piso0_005627-2	Piso0_005627 protein. (1743 aa)
	Piso0_003939	Piso0_003939 protein. (293 aa)
	Piso0_002159	Chitin synthase; Plays a major role in cell wall biogenesis. (995 aa)
	Piso0_002456	Piso0_002456 protein. (747 aa)
	Piso0_002159-2	Chitin synthase; Plays a major role in cell wall biogenesis. (995 aa)
	Piso0_002456-2	Piso0_002456 protein. (746 aa)
	Piso0_002995	Piso0_002995 protein. (445 aa)
	Piso0_001453	Piso0_001453 protein. (1035 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000044	Piso0_001697	G8YSY2	G8YNV2	Piso0_000044 protein.	Piso0_001697 protein.	0.434
Piso0_000044	Piso0_002456	G8YSY2	G8YCN4	Piso0_000044 protein.	Piso0_002456 protein.	0.496
Piso0_000044	Piso0_002456-2	G8YSY2	G8YF35	Piso0_000044 protein.	Piso0_002456 protein.	0.496
Piso0_000044-2	Piso0_001697	G8YUE0	G8YNV2	Piso0_000044 protein.	Piso0_001697 protein.	0.434
Piso0_000044-2	Piso0_002456	G8YUE0	G8YCN4	Piso0_000044 protein.	Piso0_002456 protein.	0.496
Piso0_000044-2	Piso0_002456-2	G8YUE0	G8YF35	Piso0_000044 protein.	Piso0_002456 protein.	0.496
Piso0_000132	Piso0_005627	G8YT62	G8XZI1	Piso0_000132 protein.	Piso0_005627 protein.	0.507
Piso0_000132	Piso0_005627-2	G8YT62	G8Y2H4	Piso0_000132 protein.	Piso0_005627 protein.	0.508
Piso0_000132-2	Piso0_005627	G8YUL7	G8XZI1	Piso0_000132 protein.	Piso0_005627 protein.	0.511
Piso0_000132-2	Piso0_005627-2	G8YUL7	G8Y2H4	Piso0_000132 protein.	Piso0_005627 protein.	0.512
Piso0_000738	Piso0_001453	G8YPX4	G8YKU2	Piso0_000738 protein.	Piso0_001453 protein.	0.744
Piso0_000738	Piso0_001453-2	G8YPX4	G8YN75	Piso0_000738 protein.	Piso0_001453 protein.	0.745
Piso0_000738	Piso0_002159	G8YPX4	G8YBV2	Piso0_000738 protein.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.725
Piso0_000738	Piso0_002159-2	G8YPX4	G8YEA2	Piso0_000738 protein.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.726
Piso0_000738-2	Piso0_001453	G8YRD6	G8YKU2	Piso0_000738 protein.	Piso0_001453 protein.	0.744
Piso0_000738-2	Piso0_001453-2	G8YRD6	G8YN75	Piso0_000738 protein.	Piso0_001453 protein.	0.744
Piso0_000738-2	Piso0_002159	G8YRD6	G8YBV2	Piso0_000738 protein.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.725
Piso0_000738-2	Piso0_002159-2	G8YRD6	G8YEA2	Piso0_000738 protein.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.726
Piso0_001453	Piso0_000738	G8YKU2	G8YPX4	Piso0_001453 protein.	Piso0_000738 protein.	0.744
Piso0_001453	Piso0_000738-2	G8YKU2	G8YRD6	Piso0_001453 protein.	Piso0_000738 protein.	0.744