(51 nodes) Small-subunit processome network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_002730	Piso0_002730 protein. (293 aa)
	Piso0_000336	Piso0_000336 protein. (191 aa)
	Piso0_000402	Piso0_000402 protein. (567 aa)
	Piso0_001102	Piso0_001102 protein. (1712 aa)
	Piso0_000506	Piso0_000506 protein; Belongs to the universal ribosomal protein uL13 family. (200 aa)
	Piso0_000404	RNA helicase. (777 aa)
	Piso0_000437	Piso0_000437 protein. (753 aa)
	Piso0_005618	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (364 aa)
	Piso0_005776	Piso0_005776 protein. (529 aa)
	Piso0_005857	Piso0_005857 protein; Belongs to the universal ribosomal protein uL3 family. (389 aa)
	Piso0_005859	Piso0_005859 protein. (502 aa)
	Piso0_005869	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (249 aa)
	Piso0_005261	Piso0_005261 protein. (880 aa)
	Piso0_005618-2	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (372 aa)
	Piso0_005776-2	Piso0_005776 protein. (530 aa)
	Piso0_005857-2	Piso0_005857 protein; Belongs to the universal ribosomal protein uL3 family. (389 aa)
	Piso0_005859-2	Piso0_005859 protein. (503 aa)
	Piso0_005869-2	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (249 aa)
	Piso0_005261-2	Piso0_005261 protein. (880 aa)
	Piso0_003837	Piso0_003837 protein. (943 aa)
	Piso0_004242	Piso0_004242 protein. (309 aa)
	Piso0_004375	Piso0_004375 protein. (697 aa)
	Piso0_004678	Piso0_004678 protein. (270 aa)
	Piso0_004203	Piso0_004203 protein. (534 aa)
	Piso0_002196	Piso0_002196 protein. (869 aa)
	Piso0_002305	Piso0_002305 protein. (565 aa)
	Piso0_002555	Piso0_002555 protein. (859 aa)
	Piso0_002591	Piso0_002591 protein. (581 aa)
	Piso0_000958	Piso0_000958 protein. (519 aa)
	Piso0_000924-2	Piso0_000924 protein. (191 aa)
	Piso0_000880-2	Piso0_000880 protein. (1299 aa)
	Piso0_001073	Piso0_001073 protein. (655 aa)
	Piso0_000880	Piso0_000880 protein. (1291 aa)
	Piso0_000924	Piso0_000924 protein. (191 aa)
	Piso0_001423-2	Piso0_001423 protein; Belongs to the universal ribosomal protein uS5 family. (247 aa)
	Piso0_001368-2	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (748 aa)
	Piso0_001423	Piso0_001423 protein; Belongs to the universal ribosomal protein uS5 family. (247 aa)
	Piso0_001368	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (749 aa)
	Piso0_003561	Piso0_003561 protein. (355 aa)
	Piso0_003472	Piso0_003472 protein. (458 aa)
	Piso0_003525	Piso0_003525 protein. (684 aa)
	Piso0_003255	Piso0_003255 protein. (2493 aa)
	Piso0_002963	Piso0_002963 protein. (529 aa)
	Piso0_003621	Piso0_003621 protein. (795 aa)
	Piso0_002783-2	Piso0_002783 protein. (972 aa)
	Piso0_002730-2	Piso0_002730 protein. (290 aa)
	Piso0_002591-2	Piso0_002591 protein. (580 aa)
	Piso0_002555-2	Piso0_002555 protein. (859 aa)
	Piso0_002305-2	Piso0_002305 protein. (565 aa)
	Piso0_002196-2	Piso0_002196 protein. (869 aa)
	Piso0_002783	Piso0_002783 protein. (972 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000336	Piso0_000402	G8YV59	G8YVC5	Piso0_000336 protein.	Piso0_000402 protein.	0.999
Piso0_000336	Piso0_000404	G8YV59	G8YTX0	Piso0_000336 protein.	RNA helicase.	0.641
Piso0_000336	Piso0_000437	G8YV59	G8YTZ9	Piso0_000336 protein.	Piso0_000437 protein.	0.999
Piso0_000336	Piso0_000506	G8YV59	G8YVM0	Piso0_000336 protein.	Piso0_000506 protein; Belongs to the universal ribosomal protein uL13 family.	0.999
Piso0_000336	Piso0_000880	G8YV59	G8YQB3	Piso0_000336 protein.	Piso0_000880 protein.	0.931
Piso0_000336	Piso0_000880-2	G8YV59	G8YRS5	Piso0_000336 protein.	Piso0_000880 protein.	0.931
Piso0_000336	Piso0_000924	G8YV59	G8YQF5	Piso0_000336 protein.	Piso0_000924 protein.	0.994
Piso0_000336	Piso0_000924-2	G8YV59	G8YRW7	Piso0_000336 protein.	Piso0_000924 protein.	0.994
Piso0_000336	Piso0_000958	G8YV59	G8YS00	Piso0_000336 protein.	Piso0_000958 protein.	0.998
Piso0_000336	Piso0_001073	G8YV59	G8YQV1	Piso0_000336 protein.	Piso0_001073 protein.	0.998
Piso0_000336	Piso0_001102	G8YV59	G8YSE2	Piso0_000336 protein.	Piso0_001102 protein.	0.999
Piso0_000336	Piso0_001368	G8YV59	G8YKL2	Piso0_000336 protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.899
Piso0_000336	Piso0_001368-2	G8YV59	G8YMZ3	Piso0_000336 protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.899
Piso0_000336	Piso0_001423	G8YV59	G8YKR3	Piso0_000336 protein.	Piso0_001423 protein; Belongs to the universal ribosomal protein uS5 family.	0.999
Piso0_000336	Piso0_001423-2	G8YV59	G8YN47	Piso0_000336 protein.	Piso0_001423 protein; Belongs to the universal ribosomal protein uS5 family.	0.999
Piso0_000336	Piso0_002196	G8YV59	G8YBY8	Piso0_000336 protein.	Piso0_002196 protein.	0.993
Piso0_000336	Piso0_002196-2	G8YV59	G8YED8	Piso0_000336 protein.	Piso0_002196 protein.	0.993
Piso0_000336	Piso0_002305	G8YV59	G8YC93	Piso0_000336 protein.	Piso0_002305 protein.	0.990
Piso0_000336	Piso0_002305-2	G8YV59	G8YEP4	Piso0_000336 protein.	Piso0_002305 protein.	0.990
Piso0_000336	Piso0_002555	G8YV59	G8YCX7	Piso0_000336 protein.	Piso0_002555 protein.	0.989