(21 nodes) CDC42 GTPase cycle network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_005516	Piso0_005516 protein. (829 aa)
	Piso0_005717	Piso0_005717 protein. (550 aa)
	Piso0_004965	Piso0_004965 protein. (1201 aa)
	Piso0_005516-2	Piso0_005516 protein. (829 aa)
	Piso0_005717-2	Piso0_005717 protein. (550 aa)
	Piso0_004965-2	Piso0_004965 protein. (1202 aa)
	Piso0_002548	Piso0_002548 protein. (983 aa)
	Piso0_002801	Piso0_002801 protein. (1274 aa)
	Piso0_002548-2	Piso0_002548 protein. (983 aa)
	Piso0_002801-2	Piso0_002801 protein. (1271 aa)
	Piso0_001611	Piso0_001611 protein. (529 aa)
	Piso0_001808	Piso0_001808 protein. (617 aa)
	Piso0_001611-2	Piso0_001611 protein. (529 aa)
	Piso0_001697	Piso0_001697 protein. (191 aa)
	Piso0_001808-2	Piso0_001808 protein. (617 aa)
	Piso0_000676	Piso0_000676 protein. (207 aa)
	Piso0_000772	Piso0_000772 protein. (1777 aa)
	Piso0_000676-2	Piso0_000676 protein. (207 aa)
	Piso0_000772-2	Piso0_000772 protein. (1777 aa)
	Piso0_000449	Piso0_000449 protein. (435 aa)
	Piso0_000325	Piso0_000325 protein. (668 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000325	Piso0_000449	G8YV48	G8YU10	Piso0_000325 protein.	Piso0_000449 protein.	0.599
Piso0_000325	Piso0_001697	G8YV48	G8YNV2	Piso0_000325 protein.	Piso0_001697 protein.	0.988
Piso0_000325	Piso0_002548	G8YV48	G8YCX0	Piso0_000325 protein.	Piso0_002548 protein.	0.430
Piso0_000325	Piso0_002548-2	G8YV48	G8YFC1	Piso0_000325 protein.	Piso0_002548 protein.	0.430
Piso0_000325	Piso0_004965	G8YV48	G8Y0X1	Piso0_000325 protein.	Piso0_004965 protein.	0.984
Piso0_000325	Piso0_004965-2	G8YV48	G8Y3V7	Piso0_000325 protein.	Piso0_004965 protein.	0.984
Piso0_000325	Piso0_005516	G8YV48	G8XZ82	Piso0_000325 protein.	Piso0_005516 protein.	0.611
Piso0_000325	Piso0_005516-2	G8YV48	G8Y269	Piso0_000325 protein.	Piso0_005516 protein.	0.611
Piso0_000449	Piso0_000325	G8YU10	G8YV48	Piso0_000449 protein.	Piso0_000325 protein.	0.599
Piso0_000449	Piso0_001697	G8YU10	G8YNV2	Piso0_000449 protein.	Piso0_001697 protein.	0.811
Piso0_000449	Piso0_005516	G8YU10	G8XZ82	Piso0_000449 protein.	Piso0_005516 protein.	0.596
Piso0_000449	Piso0_005516-2	G8YU10	G8Y269	Piso0_000449 protein.	Piso0_005516 protein.	0.596
Piso0_000676	Piso0_001697	G8YPR5	G8YNV2	Piso0_000676 protein.	Piso0_001697 protein.	0.984
Piso0_000676	Piso0_004965	G8YPR5	G8Y0X1	Piso0_000676 protein.	Piso0_004965 protein.	0.523
Piso0_000676	Piso0_004965-2	G8YPR5	G8Y3V7	Piso0_000676 protein.	Piso0_004965 protein.	0.523
Piso0_000676-2	Piso0_001697	G8YR76	G8YNV2	Piso0_000676 protein.	Piso0_001697 protein.	0.984
Piso0_000676-2	Piso0_004965	G8YR76	G8Y0X1	Piso0_000676 protein.	Piso0_004965 protein.	0.523
Piso0_000676-2	Piso0_004965-2	G8YR76	G8Y3V7	Piso0_000676 protein.	Piso0_004965 protein.	0.523
Piso0_000772	Piso0_001611	G8YQ08	G8YL91	Piso0_000772 protein.	Piso0_001611 protein.	0.612
Piso0_000772	Piso0_001611-2	G8YQ08	G8YNM1	Piso0_000772 protein.	Piso0_001611 protein.	0.612