(30 nodes) Fatty acid degradation network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_002312-2	Piso0_002312 protein. (347 aa)
	Piso0_002686-2	Piso0_002686 protein; Belongs to the aldehyde dehydrogenase family. (501 aa)
	Piso0_002789-2	Piso0_002789 protein. (348 aa)
	Piso0_002808-2	Piso0_002808 protein. (506 aa)
	Piso0_003640	Piso0_003640 protein; Belongs to the thiolase-like superfamily. Thiolase family. (413 aa)
	Piso0_001474	Piso0_001474 protein. (567 aa)
	Piso0_001508	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (551 aa)
	Piso0_001474-2	Piso0_001474 protein. (565 aa)
	Piso0_001508-2	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (551 aa)
	Piso0_001188	Piso0_001188 protein; Belongs to the aldehyde dehydrogenase family. (536 aa)
	Piso0_000992	Piso0_000992 protein. (697 aa)
	Piso0_000998	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (381 aa)
	Piso0_001089	Piso0_001089 protein; Belongs to the aldehyde dehydrogenase family. (522 aa)
	Piso0_000053	Piso0_000053 protein. (275 aa)
	Piso0_000124	Piso0_000124 protein. (350 aa)
	Piso0_000053-2	Piso0_000053 protein. (276 aa)
	Piso0_000124-2	Piso0_000124 protein. (351 aa)
	Piso0_000422	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (704 aa)
	Piso0_005286	Piso0_005286 protein. (442 aa)
	Piso0_005286-2	Piso0_005286 protein. (442 aa)
	Piso0_004408	Piso0_004408 protein. (401 aa)
	Piso0_004020	Piso0_004020 protein. (905 aa)
	Piso0_004260	Piso0_004260 protein. (395 aa)
	Piso0_003745	Piso0_003745 protein. (502 aa)
	Piso0_003891	Piso0_003891 protein. (757 aa)
	Piso0_004012	Piso0_004012 protein; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
	Piso0_002312	Piso0_002312 protein. (347 aa)
	Piso0_002686	Piso0_002686 protein; Belongs to the aldehyde dehydrogenase family. (501 aa)
	Piso0_002789	Piso0_002789 protein. (348 aa)
	Piso0_002808	Piso0_002808 protein. (506 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000053	Piso0_000124	G8YSZ1	G8YT54	Piso0_000053 protein.	Piso0_000124 protein.	0.572
Piso0_000053	Piso0_000124-2	G8YSZ1	G8YUK9	Piso0_000053 protein.	Piso0_000124 protein.	0.572
Piso0_000053	Piso0_000422	G8YSZ1	G8YVE3	Piso0_000053 protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.918
Piso0_000053	Piso0_000992	G8YSZ1	G8YQM1	Piso0_000053 protein.	Piso0_000992 protein.	0.473
Piso0_000053	Piso0_001089	G8YSZ1	G8YQW7	Piso0_000053 protein.	Piso0_001089 protein; Belongs to the aldehyde dehydrogenase family.	0.565
Piso0_000053	Piso0_001188	G8YSZ1	G8YPH7	Piso0_000053 protein.	Piso0_001188 protein; Belongs to the aldehyde dehydrogenase family.	0.565
Piso0_000053	Piso0_001474	G8YSZ1	G8YKW3	Piso0_000053 protein.	Piso0_001474 protein.	0.565
Piso0_000053	Piso0_001474-2	G8YSZ1	G8YN95	Piso0_000053 protein.	Piso0_001474 protein.	0.565
Piso0_000053	Piso0_001508	G8YSZ1	G8YKZ5	Piso0_000053 protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.565
Piso0_000053	Piso0_001508-2	G8YSZ1	G8YNC7	Piso0_000053 protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.565
Piso0_000053	Piso0_002312	G8YSZ1	G8YCA0	Piso0_000053 protein.	Piso0_002312 protein.	0.572
Piso0_000053	Piso0_002312-2	G8YSZ1	G8YEQ1	Piso0_000053 protein.	Piso0_002312 protein.	0.572
Piso0_000053	Piso0_002686	G8YSZ1	G8YD92	Piso0_000053 protein.	Piso0_002686 protein; Belongs to the aldehyde dehydrogenase family.	0.565
Piso0_000053	Piso0_002686-2	G8YSZ1	G8YFP8	Piso0_000053 protein.	Piso0_002686 protein; Belongs to the aldehyde dehydrogenase family.	0.565
Piso0_000053	Piso0_002789	G8YSZ1	G8YDI5	Piso0_000053 protein.	Piso0_002789 protein.	0.572
Piso0_000053	Piso0_002789-2	G8YSZ1	G8YFZ4	Piso0_000053 protein.	Piso0_002789 protein.	0.572
Piso0_000053	Piso0_002808	G8YSZ1	G8YDK3	Piso0_000053 protein.	Piso0_002808 protein.	0.565
Piso0_000053	Piso0_002808-2	G8YSZ1	G8YG12	Piso0_000053 protein.	Piso0_002808 protein.	0.565
Piso0_000053	Piso0_003640	G8YSZ1	G8YGG9	Piso0_000053 protein.	Piso0_003640 protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.987
Piso0_000053	Piso0_003745	G8YSZ1	G8Y867	Piso0_000053 protein.	Piso0_003745 protein.	0.502