(56 nodes) Alanine, aspartate and glutamate metabolism network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_002992	Piso0_002992 protein. (573 aa)
	Piso0_005289-2	Succinate-semialdehyde dehydrogenase. (511 aa)
	Piso0_004577	Piso0_004577 protein. (302 aa)
	Piso0_005355-2	Glutamine synthetase. (368 aa)
	Piso0_004695	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (455 aa)
	Piso0_004704	Piso0_004704 protein. (358 aa)
	Piso0_004096	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (564 aa)
	Piso0_004431	Aspartate aminotransferase. (420 aa)
	Piso0_004507	Piso0_004507 protein. (1156 aa)
	Piso0_004514	Piso0_004514 protein. (429 aa)
	Piso0_004632	Piso0_004632 protein. (246 aa)
	Piso0_004654	Piso0_004654 protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (470 aa)
	Piso0_004043	Piso0_004043 protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (509 aa)
	Piso0_002091	Aspartate aminotransferase. (402 aa)
	Piso0_002094	Piso0_002094 protein. (319 aa)
	Piso0_002109	Piso0_002109 protein. (676 aa)
	Piso0_002414	Piso0_002414 protein. (977 aa)
	Piso0_002431	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (482 aa)
	Piso0_002610	Piso0_002610 protein. (831 aa)
	Piso0_002091-2	Aspartate aminotransferase. (402 aa)
	Piso0_002094-2	Piso0_002094 protein. (321 aa)
	Piso0_002109-2	Piso0_002109 protein. (676 aa)
	Piso0_002414-2	Piso0_002414 protein. (968 aa)
	Piso0_002431-2	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (482 aa)
	Piso0_002610-2	Piso0_002610 protein. (823 aa)
	Piso0_005835	Piso0_005835 protein. (416 aa)
	Piso0_005085	Amidophosphoribosyltransferase. (534 aa)
	Piso0_005130	Piso0_005130 protein. (342 aa)
	Piso0_005225	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (1052 aa)
	Piso0_005289	Succinate-semialdehyde dehydrogenase. (511 aa)
	Piso0_000453	Piso0_000453 protein. (697 aa)
	Piso0_000099-2	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. (590 aa)
	Piso0_000034-2	Piso0_000034 protein. (417 aa)
	Piso0_000099	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. (590 aa)
	Piso0_000034	Piso0_000034 protein. (417 aa)
	Piso0_000597	Piso0_000597 protein. (472 aa)
	Piso0_000892-2	Piso0_000892 protein. (249 aa)
	Piso0_000993	Piso0_000993 protein; Belongs to the asparaginase 1 family. (384 aa)
	Piso0_000892	Piso0_000892 protein. (249 aa)
	Piso0_001446-2	Piso0_001446 protein. (504 aa)
	Piso0_001378-2	Piso0_001378 protein. (2206 aa)
	Piso0_001446	Piso0_001446 protein. (504 aa)
	Piso0_001378	Piso0_001378 protein. (2206 aa)
	Piso0_003043	Piso0_003043 protein. (489 aa)
	Piso0_002969	Succinate-semialdehyde dehydrogenase. (492 aa)
	Piso0_003416	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP. (428 aa)
	Piso0_003330	Piso0_003330 protein; Belongs to the AAA ATPase family. (369 aa)
	Piso0_003529	Piso0_003529 protein. (466 aa)
	Piso0_003379	Piso0_003379 protein. (429 aa)
	Piso0_003378	Piso0_003378 protein. (896 aa)
	Piso0_003194	Piso0_003194 protein. (2152 aa)
	Piso0_005355	Glutamine synthetase. (368 aa)
	Piso0_005835-2	Piso0_005835 protein. (416 aa)
	Piso0_005085-2	Amidophosphoribosyltransferase. (534 aa)
	Piso0_005130-2	Piso0_005130 protein. (342 aa)
	Piso0_005225-2	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (1052 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000034	Piso0_000099	G8YSX3	G8YT34	Piso0_000034 protein.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.650
Piso0_000034	Piso0_000099-2	G8YSX3	G8YUI6	Piso0_000034 protein.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.650
Piso0_000034	Piso0_002094	G8YSX3	G8YBP0	Piso0_000034 protein.	Piso0_002094 protein.	0.629
Piso0_000034	Piso0_002094-2	G8YSX3	G8YE39	Piso0_000034 protein.	Piso0_002094 protein.	0.629
Piso0_000034	Piso0_002109	G8YSX3	G8YBQ4	Piso0_000034 protein.	Piso0_002109 protein.	0.699
Piso0_000034	Piso0_002109-2	G8YSX3	G8YE54	Piso0_000034 protein.	Piso0_002109 protein.	0.699
Piso0_000034	Piso0_002969	G8YSX3	G8YJZ7	Piso0_000034 protein.	Succinate-semialdehyde dehydrogenase.	0.678
Piso0_000034	Piso0_002992	G8YSX3	G8YGW3	Piso0_000034 protein.	Piso0_002992 protein.	0.699
Piso0_000034	Piso0_003043	G8YSX3	G8YK70	Piso0_000034 protein.	Piso0_003043 protein.	0.961
Piso0_000034	Piso0_003529	G8YSX3	G8YIC6	Piso0_000034 protein.	Piso0_003529 protein.	0.446
Piso0_000034	Piso0_004043	G8YSX3	G8YA84	Piso0_000034 protein.	Piso0_004043 protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.847
Piso0_000034	Piso0_004514	G8YSX3	G8Y903	Piso0_000034 protein.	Piso0_004514 protein.	0.522
Piso0_000034	Piso0_004577	G8YSX3	G8Y5V0	Piso0_000034 protein.	Piso0_004577 protein.	0.629
Piso0_000034	Piso0_004654	G8YSX3	G8Y9D8	Piso0_000034 protein.	Piso0_004654 protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.847
Piso0_000034	Piso0_005130	G8YSX3	G8Y1C6	Piso0_000034 protein.	Piso0_005130 protein.	0.488
Piso0_000034	Piso0_005130-2	G8YSX3	G8Y4A9	Piso0_000034 protein.	Piso0_005130 protein.	0.488
Piso0_000034	Piso0_005289	G8YSX3	G8Y1S4	Piso0_000034 protein.	Succinate-semialdehyde dehydrogenase.	0.678
Piso0_000034	Piso0_005289-2	G8YSX3	G8Y4Q1	Piso0_000034 protein.	Succinate-semialdehyde dehydrogenase.	0.678
Piso0_000034-2	Piso0_000099	G8YUD0	G8YT34	Piso0_000034 protein.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.650
Piso0_000034-2	Piso0_000099-2	G8YUD0	G8YUI6	Piso0_000034 protein.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.650