(51 nodes) RNA polymerase network (Millerozyma farinosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Piso0_002709	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1158 aa)
	Piso0_002695	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (148 aa)
	Piso0_002554	Piso0_002554 protein. (72 aa)
	Piso0_002247	Piso0_002247 protein. (229 aa)
	Piso0_005242-2	Piso0_005242 protein. (304 aa)
	Piso0_004897-2	Piso0_004897 protein. (267 aa)
	Piso0_004858-2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1167 aa)
	Piso0_004850-2	Piso0_004850 protein. (296 aa)
	Piso0_005751-2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1772 aa)
	Piso0_005646-2	Piso0_005646 protein. (415 aa)
	Piso0_005242	Piso0_005242 protein. (304 aa)
	Piso0_004897	Piso0_004897 protein. (267 aa)
	Piso0_004858	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1167 aa)
	Piso0_004850	Piso0_004850 protein. (296 aa)
	Piso0_005751	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1758 aa)
	Piso0_005646	Piso0_005646 protein. (415 aa)
	Piso0_003246	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (446 aa)
	Piso0_003628	Piso0_003628 protein. (639 aa)
	Piso0_003594	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (112 aa)
	Piso0_002709-2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1158 aa)
	Piso0_002640	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (111 aa)
	Piso0_002247-2	Piso0_002247 protein. (269 aa)
	Piso0_004196	Piso0_004196 protein. (158 aa)
	Piso0_004204	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (252 aa)
	Piso0_004227	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (609 aa)
	Piso0_004253	Piso0_004253 protein. (327 aa)
	Piso0_004291	Piso0_004291 protein. (195 aa)
	Piso0_003410	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1639 aa)
	Piso0_003588	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (123 aa)
	Piso0_001533	Piso0_001533 protein. (214 aa)
	Piso0_001648	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1454 aa)
	Piso0_001698	Piso0_001698 protein. (264 aa)
	Piso0_001951	Piso0_001951 protein. (73 aa)
	Piso0_002018-2	Piso0_002018 protein. (133 aa)
	Piso0_001533-2	Piso0_001533 protein. (214 aa)
	Piso0_001648-2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1454 aa)
	Piso0_000805	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (322 aa)
	Piso0_000819	Piso0_000819 protein. (493 aa)
	Piso0_000931	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1233 aa)
	Piso0_000805-2	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (322 aa)
	Piso0_000819-2	Piso0_000819 protein. (493 aa)
	Piso0_000929	Piso0_000929 protein. (173 aa)
	Piso0_000931-2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1233 aa)
	Piso0_000403	Piso0_000403 protein. (415 aa)
	Piso0_003985	Piso0_003985 protein. (192 aa)
	Piso0_002018	Piso0_002018 protein. (133 aa)
	Piso0_004170	Piso0_004170 protein. (308 aa)
	Piso0_004071	Piso0_004071 protein. (122 aa)
	Piso0_004436	Piso0_004436 protein. (363 aa)
	Piso0_004619	Piso0_004619 protein. (71 aa)
	Piso0_004496	Piso0_004496 protein. (335 aa)

Your Current Organism:

Millerozyma farinosa

NCBI taxonomy Id: 559304
Other names: M. farinosa CBS 7064, Millerozyma farinosa CBS 7064, Pichia farinosa CBS 7064

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Piso0_000403	Piso0_000805	G8YTW9	G8YQ41	Piso0_000403 protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.998
Piso0_000403	Piso0_000805-2	G8YTW9	G8YRK1	Piso0_000403 protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.998
Piso0_000403	Piso0_000929	G8YTW9	G8YRX2	Piso0_000403 protein.	Piso0_000929 protein.	0.570
Piso0_000403	Piso0_000931	G8YTW9	G8YQG2	Piso0_000403 protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.957
Piso0_000403	Piso0_000931-2	G8YTW9	G8YRX4	Piso0_000403 protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.957
Piso0_000403	Piso0_001533	G8YTW9	G8YL20	Piso0_000403 protein.	Piso0_001533 protein.	0.996
Piso0_000403	Piso0_001533-2	G8YTW9	G8YNF0	Piso0_000403 protein.	Piso0_001533 protein.	0.996
Piso0_000403	Piso0_001648	G8YTW9	G8YLC5	Piso0_000403 protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
Piso0_000403	Piso0_001648-2	G8YTW9	G8YNQ4	Piso0_000403 protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
Piso0_000403	Piso0_001698	G8YTW9	G8YLH4	Piso0_000403 protein.	Piso0_001698 protein.	0.944
Piso0_000403	Piso0_001951	G8YTW9	G8YM50	Piso0_000403 protein.	Piso0_001951 protein.	0.999
Piso0_000403	Piso0_002018	G8YTW9	G8YBG7	Piso0_000403 protein.	Piso0_002018 protein.	0.994
Piso0_000403	Piso0_002018-2	G8YTW9	G8YMB2	Piso0_000403 protein.	Piso0_002018 protein.	0.994
Piso0_000403	Piso0_002247	G8YTW9	G8YC37	Piso0_000403 protein.	Piso0_002247 protein.	0.413
Piso0_000403	Piso0_002247-2	G8YTW9	G8YEI7	Piso0_000403 protein.	Piso0_002247 protein.	0.413
Piso0_000403	Piso0_002554	G8YTW9	G8YCX6	Piso0_000403 protein.	Piso0_002554 protein.	0.999
Piso0_000403	Piso0_002640	G8YTW9	G8YFK6	Piso0_000403 protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
Piso0_000403	Piso0_002695	G8YTW9	G8YDA1	Piso0_000403 protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
Piso0_000403	Piso0_002709	G8YTW9	G8YDB2	Piso0_000403 protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
Piso0_000403	Piso0_002709-2	G8YTW9	G8YFR8	Piso0_000403 protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996