(9 nodes) Nucleolar ribonuclease P complex network (Trichophyton rubrum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TERG_08272	Uncharacterized protein. (213 aa)
	TERG_08289	Uncharacterized protein. (199 aa)
	TERG_07340	Uncharacterized protein. (383 aa)
	TERG_05062	Ribonuclease P protein subunit. (247 aa)
	TERG_03441	Uncharacterized protein. (206 aa)
	TERG_01909	Uncharacterized protein. (318 aa)
	TERG_01000	Uncharacterized protein. (217 aa)
	TERG_00123	Uncharacterized protein. (860 aa)
	TERG_01309	Uncharacterized protein. (187 aa)

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_00123	TERG_01000	F2SDZ3	F2SEE9	Uncharacterized protein.	Uncharacterized protein.	0.999
TERG_00123	TERG_01309	F2SDZ3	F2SBS5	Uncharacterized protein.	Uncharacterized protein.	0.998
TERG_00123	TERG_01909	F2SDZ3	F2SIN9	Uncharacterized protein.	Uncharacterized protein.	0.998
TERG_00123	TERG_03441	F2SDZ3	F2SK88	Uncharacterized protein.	Uncharacterized protein.	0.995
TERG_00123	TERG_05062	F2SDZ3	F2SR45	Uncharacterized protein.	Ribonuclease P protein subunit.	0.999
TERG_00123	TERG_07340	F2SDZ3	F2SXP8	Uncharacterized protein.	Uncharacterized protein.	0.981
TERG_00123	TERG_08272	F2SDZ3	F2T0D4	Uncharacterized protein.	Uncharacterized protein.	0.990
TERG_00123	TERG_08289	F2SDZ3	F2T0F2	Uncharacterized protein.	Uncharacterized protein.	0.999
TERG_01000	TERG_00123	F2SEE9	F2SDZ3	Uncharacterized protein.	Uncharacterized protein.	0.999
TERG_01000	TERG_01309	F2SEE9	F2SBS5	Uncharacterized protein.	Uncharacterized protein.	0.991
TERG_01000	TERG_01909	F2SEE9	F2SIN9	Uncharacterized protein.	Uncharacterized protein.	0.997
TERG_01000	TERG_03441	F2SEE9	F2SK88	Uncharacterized protein.	Uncharacterized protein.	0.995
TERG_01000	TERG_05062	F2SEE9	F2SR45	Uncharacterized protein.	Ribonuclease P protein subunit.	0.998
TERG_01000	TERG_07340	F2SEE9	F2SXP8	Uncharacterized protein.	Uncharacterized protein.	0.925
TERG_01000	TERG_08272	F2SEE9	F2T0D4	Uncharacterized protein.	Uncharacterized protein.	0.989
TERG_01000	TERG_08289	F2SEE9	F2T0F2	Uncharacterized protein.	Uncharacterized protein.	0.998
TERG_01309	TERG_00123	F2SBS5	F2SDZ3	Uncharacterized protein.	Uncharacterized protein.	0.998
TERG_01309	TERG_01000	F2SBS5	F2SEE9	Uncharacterized protein.	Uncharacterized protein.	0.991
TERG_01309	TERG_01909	F2SBS5	F2SIN9	Uncharacterized protein.	Uncharacterized protein.	0.998
TERG_01309	TERG_03441	F2SBS5	F2SK88	Uncharacterized protein.	Uncharacterized protein.	0.988