(19 nodes) snRNA metabolic process network (Trichophyton rubrum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TERG_01368	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (222 aa)
	TERG_11520	RNase_PH domain-containing protein. (535 aa)
	TERG_04441	Centromere/microtubule-binding protein CBF5. (494 aa)
	TERG_03530	RNase_PH domain-containing protein. (379 aa)
	TERG_03395	RNase_PH_C domain-containing protein. (138 aa)
	TERG_02090	Uncharacterized protein. (182 aa)
	USB1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (323 aa)
	TERG_01844	Uncharacterized protein. (397 aa)
	TERG_08179	TRUD domain-containing protein. (773 aa)
	TERG_00618	Uncharacterized protein. (251 aa)
	TERG_00798	Uncharacterized protein. (564 aa)
	TERG_00926	HRDC domain-containing protein. (867 aa)
	TERG_00998	KH_dom_type_1 domain-containing protein. (271 aa)
	TERG_02194	Exonuclease domain-containing protein. (734 aa)
	TERG_02431	Uncharacterized protein. (249 aa)
	TERG_06859	RNase_PH domain-containing protein. (302 aa)
	TERG_02557	KH_dom_type_1 domain-containing protein. (166 aa)
	TERG_06254	Uncharacterized protein. (617 aa)
	TERG_04482	RNase III domain-containing protein. (399 aa)

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_00618	TERG_00798	F2SCG3	F2SD98	Uncharacterized protein.	Uncharacterized protein.	0.455
TERG_00618	TERG_00998	F2SCG3	F2SEE7	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.999
TERG_00618	TERG_01368	F2SCG3	F2SC37	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.803
TERG_00618	TERG_02194	F2SCG3	F2SG68	Uncharacterized protein.	Exonuclease domain-containing protein.	0.453
TERG_00618	TERG_02431	F2SCG3	F2SH77	Uncharacterized protein.	Uncharacterized protein.	0.997
TERG_00618	TERG_02557	F2SCG3	F2SHW4	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.999
TERG_00618	TERG_03395	F2SCG3	F2SK42	Uncharacterized protein.	RNase_PH_C domain-containing protein.	0.999
TERG_00618	TERG_03530	F2SCG3	F2SKJ5	Uncharacterized protein.	RNase_PH domain-containing protein.	0.995
TERG_00618	TERG_06254	F2SCG3	F2SUV8	Uncharacterized protein.	Uncharacterized protein.	0.573
TERG_00618	TERG_06859	F2SCG3	F2SWD9	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
TERG_00618	TERG_11520	F2SCG3	A0A087PFH2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
TERG_00798	TERG_00618	F2SD98	F2SCG3	Uncharacterized protein.	Uncharacterized protein.	0.455
TERG_00798	TERG_00998	F2SD98	F2SEE7	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.406
TERG_00798	TERG_02431	F2SD98	F2SH77	Uncharacterized protein.	Uncharacterized protein.	0.538
TERG_00798	TERG_03395	F2SD98	F2SK42	Uncharacterized protein.	RNase_PH_C domain-containing protein.	0.487
TERG_00798	TERG_06859	F2SD98	F2SWD9	Uncharacterized protein.	RNase_PH domain-containing protein.	0.482
TERG_00798	TERG_11520	F2SD98	A0A087PFH2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.538
TERG_00926	TERG_00998	F2SE25	F2SEE7	HRDC domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.470
TERG_00926	TERG_02431	F2SE25	F2SH77	HRDC domain-containing protein.	Uncharacterized protein.	0.626
TERG_00926	TERG_02557	F2SE25	F2SHW4	HRDC domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.488