(10 nodes) TBP-class protein binding network (Trichophyton rubrum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TERG_05594	Uncharacterized protein. (492 aa)
	TERG_00492	Uncharacterized protein. (1910 aa)
	TERG_00337	TFIIB-type domain-containing protein. (352 aa)
	TERG_02275	Uncharacterized protein. (396 aa)
	TERG_02277	TFIIA_gamma_N domain-containing protein. (85 aa)
	TERG_02482	TFIID_20kDa domain-containing protein. (654 aa)
	TERG_03378	DUF3591 domain-containing protein. (1126 aa)
	TERG_04321	Uncharacterized protein. (666 aa)
	TERG_05394	TIP120 domain-containing protein. (1219 aa)
	TERG_07478	TFIIB-type domain-containing protein. (876 aa)

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_00337	TERG_00492	F2SF70	F2SBN2	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.604
TERG_00337	TERG_02275	F2SF70	F2SGF3	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.964
TERG_00337	TERG_02277	F2SF70	F2SGF5	TFIIB-type domain-containing protein.	TFIIA_gamma_N domain-containing protein.	0.967
TERG_00337	TERG_02482	F2SF70	F2SHI3	TFIIB-type domain-containing protein.	TFIID_20kDa domain-containing protein.	0.963
TERG_00337	TERG_03378	F2SF70	F2SK25	TFIIB-type domain-containing protein.	DUF3591 domain-containing protein.	0.984
TERG_00337	TERG_07478	F2SF70	F2SY19	TFIIB-type domain-containing protein.	TFIIB-type domain-containing protein.	0.463
TERG_00492	TERG_00337	F2SBN2	F2SF70	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.604
TERG_00492	TERG_02482	F2SBN2	F2SHI3	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.571
TERG_00492	TERG_03378	F2SBN2	F2SK25	Uncharacterized protein.	DUF3591 domain-containing protein.	0.498
TERG_02275	TERG_00337	F2SGF3	F2SF70	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.964
TERG_02275	TERG_02482	F2SGF3	F2SHI3	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.856
TERG_02275	TERG_03378	F2SGF3	F2SK25	Uncharacterized protein.	DUF3591 domain-containing protein.	0.896
TERG_02277	TERG_00337	F2SGF5	F2SF70	TFIIA_gamma_N domain-containing protein.	TFIIB-type domain-containing protein.	0.967
TERG_02277	TERG_02482	F2SGF5	F2SHI3	TFIIA_gamma_N domain-containing protein.	TFIID_20kDa domain-containing protein.	0.856
TERG_02277	TERG_03378	F2SGF5	F2SK25	TFIIA_gamma_N domain-containing protein.	DUF3591 domain-containing protein.	0.903
TERG_02482	TERG_00337	F2SHI3	F2SF70	TFIID_20kDa domain-containing protein.	TFIIB-type domain-containing protein.	0.963
TERG_02482	TERG_00492	F2SHI3	F2SBN2	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.571
TERG_02482	TERG_02275	F2SHI3	F2SGF3	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.856
TERG_02482	TERG_02277	F2SHI3	F2SGF5	TFIID_20kDa domain-containing protein.	TFIIA_gamma_N domain-containing protein.	0.856
TERG_02482	TERG_03378	F2SHI3	F2SK25	TFIID_20kDa domain-containing protein.	DUF3591 domain-containing protein.	0.999