(14 nodes) Regulation of transcription elongation from RNA polymerase II promoter network (Trichophyton rubrum)

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Your Input:
	TERG_12150	Serine/threonine-protein kinase bur1. (133 aa)
	TERG_12151	Serine/threonine-protein kinase bur1. (137 aa)
	TERG_01608	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family. (393 aa)
	TERG_01701	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (342 aa)
	TERG_02516	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1340 aa)
	TERG_02559	Plus3 domain-containing protein. (637 aa)
	TERG_02864	Uncharacterized protein. (449 aa)
	TERG_04523	CMGC/CDK/CRK7 protein kinase. (990 aa)
	TERG_04080	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (120 aa)
	TERG_04838	CDC73_C domain-containing protein. (485 aa)
	TERG_08032	Cell differentiation protein rcd1. (399 aa)
	TERG_07895	Prefoldin, alpha subunit. (172 aa)
	TERG_08534	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (487 aa)
	TERG_08559	26S protease regulatory subunit 8; Belongs to the AAA ATPase family. (389 aa)

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_01608	TERG_08559	F2SH24	F2T172	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
TERG_01701	TERG_04080	F2SHH1	F2SPT1	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.870
TERG_01701	TERG_04523	F2SHH1	F2SNL5	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	CMGC/CDK/CRK7 protein kinase.	0.794
TERG_01701	TERG_08534	F2SHH1	F2T148	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.890
TERG_01701	TERG_12150	F2SHH1	A0A080WLB0	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase bur1.	0.773
TERG_01701	TERG_12151	F2SHH1	A0A080WTW1	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase bur1.	0.773
TERG_02516	TERG_02559	F2SHL9	F2SHW6	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.	Plus3 domain-containing protein.	0.954
TERG_02516	TERG_02864	F2SHL9	F2SLA1	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.	Uncharacterized protein.	0.953
TERG_02516	TERG_04080	F2SHL9	F2SPT1	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.974
TERG_02516	TERG_04523	F2SHL9	F2SNL5	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.	CMGC/CDK/CRK7 protein kinase.	0.459
TERG_02516	TERG_04838	F2SHL9	F2SQH4	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.	CDC73_C domain-containing protein.	0.959
TERG_02516	TERG_12150	F2SHL9	A0A080WLB0	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.	Serine/threonine-protein kinase bur1.	0.503
TERG_02516	TERG_12151	F2SHL9	A0A080WTW1	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.	Serine/threonine-protein kinase bur1.	0.503
TERG_02559	TERG_02516	F2SHW6	F2SHL9	Plus3 domain-containing protein.	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.	0.954
TERG_02559	TERG_02864	F2SHW6	F2SLA1	Plus3 domain-containing protein.	Uncharacterized protein.	0.995
TERG_02559	TERG_04080	F2SHW6	F2SPT1	Plus3 domain-containing protein.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.958
TERG_02559	TERG_04523	F2SHW6	F2SNL5	Plus3 domain-containing protein.	CMGC/CDK/CRK7 protein kinase.	0.419
TERG_02559	TERG_04838	F2SHW6	F2SQH4	Plus3 domain-containing protein.	CDC73_C domain-containing protein.	0.995
TERG_02559	TERG_12150	F2SHW6	A0A080WLB0	Plus3 domain-containing protein.	Serine/threonine-protein kinase bur1.	0.413
TERG_02559	TERG_12151	F2SHW6	A0A080WTW1	Plus3 domain-containing protein.	Serine/threonine-protein kinase bur1.	0.413