(12 nodes) Nonfunctional rRNA decay network (Trichophyton rubrum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TERG_06859	RNase_PH domain-containing protein. (302 aa)
	TERG_11520	RNase_PH domain-containing protein. (535 aa)
	TERG_00618	Uncharacterized protein. (251 aa)
	TERG_00926	HRDC domain-containing protein. (867 aa)
	TERG_01250	Uncharacterized protein. (535 aa)
	TERG_03395	RNase_PH_C domain-containing protein. (138 aa)
	TERG_03530	RNase_PH domain-containing protein. (379 aa)
	TERG_02911	Uncharacterized protein; Belongs to the RNR ribonuclease family. (947 aa)
	TERG_04170	Uncharacterized protein. (393 aa)
	TERG_04903	Uncharacterized protein. (1342 aa)
	TERG_08559	26S protease regulatory subunit 8; Belongs to the AAA ATPase family. (389 aa)
	TERG_06231	mRNA surveillance protein pelota. (420 aa)

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_00618	TERG_02911	F2SCG3	F2SLJ8	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.995
TERG_00618	TERG_03395	F2SCG3	F2SK42	Uncharacterized protein.	RNase_PH_C domain-containing protein.	0.999
TERG_00618	TERG_03530	F2SCG3	F2SKJ5	Uncharacterized protein.	RNase_PH domain-containing protein.	0.995
TERG_00618	TERG_06859	F2SCG3	F2SWD9	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
TERG_00618	TERG_11520	F2SCG3	A0A087PFH2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
TERG_00926	TERG_02911	F2SE25	F2SLJ8	HRDC domain-containing protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.979
TERG_00926	TERG_03530	F2SE25	F2SKJ5	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.470
TERG_00926	TERG_06859	F2SE25	F2SWD9	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.470
TERG_00926	TERG_08559	F2SE25	F2T172	HRDC domain-containing protein.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.709
TERG_00926	TERG_11520	F2SE25	A0A087PFH2	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.970
TERG_02911	TERG_00618	F2SLJ8	F2SCG3	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.995
TERG_02911	TERG_00926	F2SLJ8	F2SE25	Uncharacterized protein; Belongs to the RNR ribonuclease family.	HRDC domain-containing protein.	0.979
TERG_02911	TERG_03395	F2SLJ8	F2SK42	Uncharacterized protein; Belongs to the RNR ribonuclease family.	RNase_PH_C domain-containing protein.	0.996
TERG_02911	TERG_03530	F2SLJ8	F2SKJ5	Uncharacterized protein; Belongs to the RNR ribonuclease family.	RNase_PH domain-containing protein.	0.997
TERG_02911	TERG_06859	F2SLJ8	F2SWD9	Uncharacterized protein; Belongs to the RNR ribonuclease family.	RNase_PH domain-containing protein.	0.997
TERG_02911	TERG_11520	F2SLJ8	A0A087PFH2	Uncharacterized protein; Belongs to the RNR ribonuclease family.	RNase_PH domain-containing protein.	0.997
TERG_03395	TERG_00618	F2SK42	F2SCG3	RNase_PH_C domain-containing protein.	Uncharacterized protein.	0.999
TERG_03395	TERG_02911	F2SK42	F2SLJ8	RNase_PH_C domain-containing protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.996
TERG_03395	TERG_03530	F2SK42	F2SKJ5	RNase_PH_C domain-containing protein.	RNase_PH domain-containing protein.	0.999
TERG_03395	TERG_06859	F2SK42	F2SWD9	RNase_PH_C domain-containing protein.	RNase_PH domain-containing protein.	0.999