(22 nodes) Transcription preinitiation complex assembly network (Trichophyton rubrum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TERG_05594	Uncharacterized protein. (492 aa)
	TERG_04025	Uncharacterized protein. (480 aa)
	TERG_05100	Uncharacterized protein. (353 aa)
	TERG_05403	CBFD_NFYB_HMF domain-containing protein. (135 aa)
	TERG_04573	TAFII28 domain-containing protein. (408 aa)
	TERG_03108	Uncharacterized protein. (274 aa)
	TERG_03809	CBFD_NFYB_HMF domain-containing protein. (312 aa)
	TERG_02879	Uncharacterized protein. (190 aa)
	TERG_03378	DUF3591 domain-containing protein. (1126 aa)
	TERG_02089	Transcription elongation factor S-II. (297 aa)
	TERG_02482	TFIID_20kDa domain-containing protein. (654 aa)
	TERG_02277	TFIIA_gamma_N domain-containing protein. (85 aa)
	TERG_02275	Uncharacterized protein. (396 aa)
	TERG_00337	TFIIB-type domain-containing protein. (352 aa)
	TERG_12678	Fungal_trans domain-containing protein. (710 aa)
	TERG_05590	Uncharacterized protein. (435 aa)
	TERG_04575	TAF domain-containing protein. (447 aa)
	TERG_05848	Uncharacterized protein. (243 aa)
	TERG_06506	Zn(2)-C6 fungal-type domain-containing protein. (517 aa)
	TERG_06593	Myb_DNA-bind_7 domain-containing protein. (350 aa)
	TERG_07401	Uncharacterized protein. (274 aa)
	TERG_07478	TFIIB-type domain-containing protein. (876 aa)

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_00337	TERG_02089	F2SF70	F2SJA6	TFIIB-type domain-containing protein.	Transcription elongation factor S-II.	0.984
TERG_00337	TERG_02275	F2SF70	F2SGF3	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.964
TERG_00337	TERG_02277	F2SF70	F2SGF5	TFIIB-type domain-containing protein.	TFIIA_gamma_N domain-containing protein.	0.967
TERG_00337	TERG_02482	F2SF70	F2SHI3	TFIIB-type domain-containing protein.	TFIID_20kDa domain-containing protein.	0.963
TERG_00337	TERG_02879	F2SF70	F2SLB6	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.923
TERG_00337	TERG_03108	F2SF70	F2SMK1	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.910
TERG_00337	TERG_03378	F2SF70	F2SK25	TFIIB-type domain-containing protein.	DUF3591 domain-containing protein.	0.984
TERG_00337	TERG_03809	F2SF70	F2SM88	TFIIB-type domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.640
TERG_00337	TERG_04573	F2SF70	F2SNR3	TFIIB-type domain-containing protein.	TAFII28 domain-containing protein.	0.910
TERG_00337	TERG_04575	F2SF70	F2SNR6	TFIIB-type domain-containing protein.	TAF domain-containing protein.	0.941
TERG_00337	TERG_05100	F2SF70	F2SR83	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.971
TERG_00337	TERG_05403	F2SF70	F2SSF1	TFIIB-type domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.556
TERG_00337	TERG_05590	F2SF70	F2SSY7	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.996
TERG_00337	TERG_05848	F2SF70	F2STQ0	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.910
TERG_00337	TERG_06593	F2SF70	F2SVM1	TFIIB-type domain-containing protein.	Myb_DNA-bind_7 domain-containing protein.	0.406
TERG_00337	TERG_07401	F2SF70	F2SXU3	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.980
TERG_00337	TERG_07478	F2SF70	F2SY19	TFIIB-type domain-containing protein.	TFIIB-type domain-containing protein.	0.463
TERG_02089	TERG_00337	F2SJA6	F2SF70	Transcription elongation factor S-II.	TFIIB-type domain-containing protein.	0.984
TERG_02089	TERG_02275	F2SJA6	F2SGF3	Transcription elongation factor S-II.	Uncharacterized protein.	0.911
TERG_02089	TERG_02277	F2SJA6	F2SGF5	Transcription elongation factor S-II.	TFIIA_gamma_N domain-containing protein.	0.911