(8 nodes) Elongator holoenzyme complex network (Trichophyton rubrum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TERG_05060	Uncharacterized protein. (399 aa)
	TERG_08190	Uncharacterized protein. (136 aa)
	TERG_07617	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family. (1321 aa)
	TERG_06685	DPBB_1 domain-containing protein. (257 aa)
	TERG_06420	Uncharacterized protein. (672 aa)
	TERG_04055	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. (576 aa)
	TERG_02398	Uncharacterized protein. (404 aa)
	TERG_01245	Uncharacterized protein. (348 aa)

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_01245	TERG_04055	F2SFV8	F2SPQ6	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.946
TERG_01245	TERG_05060	F2SFV8	F2SR42	Uncharacterized protein.	Uncharacterized protein.	0.968
TERG_01245	TERG_06420	F2SFV8	F2STV1	Uncharacterized protein.	Uncharacterized protein.	0.938
TERG_01245	TERG_07617	F2SFV8	F2SYG2	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.949
TERG_04055	TERG_01245	F2SPQ6	F2SFV8	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.946
TERG_04055	TERG_05060	F2SPQ6	F2SR42	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.989
TERG_04055	TERG_06420	F2SPQ6	F2STV1	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.988
TERG_04055	TERG_06685	F2SPQ6	F2SVW4	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	DPBB_1 domain-containing protein.	0.920
TERG_04055	TERG_07617	F2SPQ6	F2SYG2	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.996
TERG_04055	TERG_08190	F2SPQ6	F2T052	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.887
TERG_05060	TERG_01245	F2SR42	F2SFV8	Uncharacterized protein.	Uncharacterized protein.	0.968
TERG_05060	TERG_04055	F2SR42	F2SPQ6	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.989
TERG_05060	TERG_06420	F2SR42	F2STV1	Uncharacterized protein.	Uncharacterized protein.	0.978
TERG_05060	TERG_06685	F2SR42	F2SVW4	Uncharacterized protein.	DPBB_1 domain-containing protein.	0.953
TERG_05060	TERG_07617	F2SR42	F2SYG2	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.991
TERG_05060	TERG_08190	F2SR42	F2T052	Uncharacterized protein.	Uncharacterized protein.	0.925
TERG_06420	TERG_01245	F2STV1	F2SFV8	Uncharacterized protein.	Uncharacterized protein.	0.938
TERG_06420	TERG_04055	F2STV1	F2SPQ6	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.988
TERG_06420	TERG_05060	F2STV1	F2SR42	Uncharacterized protein.	Uncharacterized protein.	0.978
TERG_06420	TERG_06685	F2STV1	F2SVW4	Uncharacterized protein.	DPBB_1 domain-containing protein.	0.907