(98 nodes) mRNA surveillance pathway network (Trichophyton rubrum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TERG_03446	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (412 aa)
	TERG_04393	Uncharacterized protein. (274 aa)
	TERG_04408	Uncharacterized protein. (448 aa)
	TERG_04446	Eukaryotic peptide chain release factor subunit 1. (479 aa)
	TERG_04664	Uncharacterized protein. (376 aa)
	TERG_04012	SAP domain-containing protein. (645 aa)
	TERG_04037	Uncharacterized protein. (808 aa)
	TERG_04893	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (781 aa)
	TERG_05093	Protein Clp1. (325 aa)
	TERG_05275	COP9 signalosome complex subunit 5. (314 aa)
	TERG_05348	Pinin_SDK_memA domain-containing protein. (305 aa)
	TERG_05356	Uncharacterized protein. (367 aa)
	TERG_05973	WD_REPEATS_REGION domain-containing protein. (362 aa)
	TERG_05579	Cytochrome b5 heme-binding domain-containing protein. (652 aa)
	TERG_05581	Uncharacterized protein. (152 aa)
	TERG_05752	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (342 aa)
	TERG_05816	Uncharacterized protein. (195 aa)
	TERG_05832	Serine/threonine-protein phosphatase. (582 aa)
	TERG_06493	Uncharacterized protein. (640 aa)
	TERG_06044	Uncharacterized protein. (134 aa)
	TERG_06082	Uncharacterized protein. (651 aa)
	TERG_06087	Uncharacterized protein. (699 aa)
	TERG_06113	TPR_REGION domain-containing protein. (905 aa)
	TERG_06231	mRNA surveillance protein pelota. (420 aa)
	TERG_06237	TYR_PHOSPHATASE_2 domain-containing protein. (725 aa)
	TERG_06301	FAD_binding_2 domain-containing protein. (492 aa)
	TERG_06627	RNA-dependent RNA polymerase. (1207 aa)
	TERG_06713	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins. (1458 aa)
	TERG_06722	Uncharacterized protein. (353 aa)
	TERG_06808	RRM domain-containing protein. (160 aa)
	TERG_06861	RNA polymerase II subunit A domain phosphatase ssu72. (288 aa)
	TERG_06924	mRNA 3'-end-processing protein yth1. (251 aa)
	TERG_07104	Uncharacterized protein. (758 aa)
	TERG_07468	C3H1-type domain-containing protein. (137 aa)
	TERG_07499	Uncharacterized protein. (841 aa)
	TERG_07745	ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family. (387 aa)
	TERG_07823	Uncharacterized protein. (915 aa)
	TERG_07841	RRM domain-containing protein. (288 aa)
	TERG_07863	RRM domain-containing protein. (277 aa)
	TERG_08961	Uncharacterized protein. (801 aa)
	TERG_07932	Uncharacterized protein. (154 aa)
	TERG_08968	Uncharacterized protein. (528 aa)
	TERG_08045	Uncharacterized protein. (1216 aa)
	TERG_08214	Uncharacterized protein. (259 aa)
	TERG_08216	Uncharacterized protein. (812 aa)
	TERG_08311	Fip1 domain-containing protein. (385 aa)
	TERG_08323	Serine/threonine-protein phosphatase. (329 aa)
	TERG_08369	PWI domain-containing protein. (486 aa)
	TERG_08372	Uncharacterized protein. (87 aa)
	TERG_08548	RRM domain-containing protein. (361 aa)
	TERG_04315	Uncharacterized protein. (438 aa)
	TERG_03038	Translation elongation factor Tu. (802 aa)
	TERG_02910	Uncharacterized protein. (112 aa)
	TERG_02884	RRM domain-containing protein. (186 aa)
	TERG_02754	Uncharacterized protein. (886 aa)
	TERG_02751	Mago-bind domain-containing protein. (207 aa)
	TERG_03424	Nuclear cap-binding protein subunit 2. (168 aa)
	TERG_03394	Polyadenylation factor subunit 2. (603 aa)
	TERG_03290	RRM domain-containing protein. (303 aa)
	TERG_03265	Uncharacterized protein. (489 aa)
	TERG_02081	RNA binding protein. (422 aa)
	TERG_02037	Uncharacterized protein. (293 aa)
	TERG_01973	Uncharacterized protein. (332 aa)
	TERG_02694	Sulfite efflux pump SSU1. (469 aa)
	TERG_01819	Protein CFT1. (351 aa)
	TERG_02552	Uncharacterized protein. (391 aa)
	TERG_02518	Uncharacterized protein. (630 aa)
	TERG_02486	eIF2A domain-containing protein. (736 aa)
	TERG_02399	RRM domain-containing protein. (1604 aa)
	TERG_01552	NTF2 domain-containing protein. (177 aa)
	TERG_02262	WD_REPEATS_REGION domain-containing protein. (1596 aa)
	TERG_02175	Lactamase_B domain-containing protein. (849 aa)
	TERG_01226	GAR domain-containing protein. (1234 aa)
	TERG_00959	RRM domain-containing protein. (777 aa)
	TERG_00944	Cleavage and polyadenylation specificity factor subunit 2. (1015 aa)
	TERG_00077	Tr-type G domain-containing protein. (736 aa)
	TERG_00034	mRNA cap guanine-N7 methyltransferase. (488 aa)
	TERG_00017	Uncharacterized protein. (566 aa)
	TERG_00623	ATP-dependent RNA helicase DBP5; Belongs to the DEAD box helicase family. (481 aa)
	TERG_01400	RRM domain-containing protein. (604 aa)
	TERG_01308	ATP-dependent RNA helicase SUB2. (441 aa)
	TERG_00460	Uncharacterized protein. (572 aa)
	TERG_12642	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (499 aa)
	TERG_12444	Uncharacterized protein. (372 aa)
	TERG_12026	MIF4G domain-containing protein. (839 aa)
	TERG_12656	CPSF73-100_C domain-containing protein. (389 aa)
	TERG_12641	PAP_RNA-bind domain-containing protein. (91 aa)
	TERG_12404	Uncharacterized protein. (57 aa)
	TERG_12406	MIF4G_like_2 domain-containing protein. (288 aa)
	TERG_12122	Serine/threonine-protein phosphatase 2A regulatory subunit gamma isoform. (227 aa)
	TERG_12445	mRNA 3'-end-processing protein rna14. (332 aa)
	TERG_12124	Uncharacterized protein. (116 aa)
	TERG_11714	RRM domain-containing protein. (258 aa)
	TERG_12025	Upf2 domain-containing protein. (290 aa)
	TERG_11595	Uncharacterized protein. (193 aa)
	TERG_12657	Endoribonuclease ysh1. (193 aa)
	TERG_12405	MIF4G_like domain-containing protein. (350 aa)
	TERG_12123	Uncharacterized protein. (140 aa)

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_00017	TERG_03290	F2SDD0	F2SJT3	Uncharacterized protein.	RRM domain-containing protein.	0.406
TERG_00017	TERG_04408	F2SDD0	F2SN97	Uncharacterized protein.	Uncharacterized protein.	0.406
TERG_00034	TERG_03424	F2SDE7	F2SK71	mRNA cap guanine-N7 methyltransferase.	Nuclear cap-binding protein subunit 2.	0.793
TERG_00034	TERG_03446	F2SDE7	F2SK93	mRNA cap guanine-N7 methyltransferase.	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family.	0.880
TERG_00034	TERG_06237	F2SDE7	F2SUU1	mRNA cap guanine-N7 methyltransferase.	TYR_PHOSPHATASE_2 domain-containing protein.	0.801
TERG_00034	TERG_12404	F2SDE7	A0A080WPP2	mRNA cap guanine-N7 methyltransferase.	Uncharacterized protein.	0.673
TERG_00034	TERG_12405	F2SDE7	A0A080WI72	mRNA cap guanine-N7 methyltransferase.	MIF4G_like domain-containing protein.	0.673
TERG_00034	TERG_12406	F2SDE7	A0A080WN96	mRNA cap guanine-N7 methyltransferase.	MIF4G_like_2 domain-containing protein.	0.673
TERG_00077	TERG_01400	F2SDP4	F2SCB8	Tr-type G domain-containing protein.	RRM domain-containing protein.	0.665
TERG_00077	TERG_04037	F2SDP4	F2SPN9	Tr-type G domain-containing protein.	Uncharacterized protein.	0.415
TERG_00077	TERG_04446	F2SDP4	F2SND5	Tr-type G domain-containing protein.	Eukaryotic peptide chain release factor subunit 1.	0.999
TERG_00077	TERG_04893	F2SDP4	F2SQN1	Tr-type G domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.949
TERG_00077	TERG_06231	F2SDP4	F2SUT5	Tr-type G domain-containing protein.	mRNA surveillance protein pelota.	0.712
TERG_00077	TERG_07745	F2SDP4	F2SYT9	Tr-type G domain-containing protein.	ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.	0.490
TERG_00077	TERG_07823	F2SDP4	F2SZ53	Tr-type G domain-containing protein.	Uncharacterized protein.	0.951
TERG_00077	TERG_12025	F2SDP4	A0A080WKF6	Tr-type G domain-containing protein.	Upf2 domain-containing protein.	0.555
TERG_00077	TERG_12026	F2SDP4	A0A080WSX7	Tr-type G domain-containing protein.	MIF4G domain-containing protein.	0.555
TERG_00460	TERG_02884	F2SBJ8	F2SLC1	Uncharacterized protein.	RRM domain-containing protein.	0.415
TERG_00460	TERG_03394	F2SBJ8	F2SK41	Uncharacterized protein.	Polyadenylation factor subunit 2.	0.479
TERG_00460	TERG_03424	F2SBJ8	F2SK71	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.764