(58 nodes) Basal transcription factors network (Trichophyton rubrum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TERG_00143	Uncharacterized protein. (672 aa)
	TERG_00276	TATA-box-binding protein. (291 aa)
	TERG_00279	Uncharacterized protein. (304 aa)
	TERG_01089	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (289 aa)
	TERG_00337	TFIIB-type domain-containing protein. (352 aa)
	TERG_00397	Chromatin modification-related protein. (774 aa)
	TERG_02161	Fido domain-containing protein. (127 aa)
	TERG_02203	BRO1 domain-containing protein. (541 aa)
	TERG_02205	BTP domain-containing protein. (213 aa)
	TERG_02275	Uncharacterized protein. (396 aa)
	TERG_02277	TFIIA_gamma_N domain-containing protein. (85 aa)
	TERG_02327	Uncharacterized protein. (1610 aa)
	TERG_01701	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (342 aa)
	TERG_02482	TFIID_20kDa domain-containing protein. (654 aa)
	TERG_01941	Uncharacterized protein. (1241 aa)
	TERG_03318	Uncharacterized protein. (283 aa)
	TERG_03378	DUF3591 domain-containing protein. (1126 aa)
	TERG_03436	HTH TFE/IIEalpha-type domain-containing protein. (472 aa)
	TERG_02860	Uncharacterized protein. (258 aa)
	TERG_02879	Uncharacterized protein. (190 aa)
	TERG_03690	Uncharacterized protein. (401 aa)
	TERG_03691	HNHc domain-containing protein. (296 aa)
	TERG_03831	RNA polymerase II transcription factor B subunit 5. (137 aa)
	TERG_03840	Uncharacterized protein. (337 aa)
	TERG_03108	Uncharacterized protein. (274 aa)
	TERG_04360	Uncharacterized protein. (637 aa)
	TERG_04495	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (489 aa)
	TERG_04527	Uncharacterized protein. (615 aa)
	TERG_04573	TAFII28 domain-containing protein. (408 aa)
	TERG_04575	TAF domain-containing protein. (447 aa)
	TERG_04601	Uncharacterized protein. (581 aa)
	TERG_03989	CYCLIN domain-containing protein. (458 aa)
	TERG_04118	Zn(2)-C6 fungal-type domain-containing protein. (486 aa)
	TERG_05100	Uncharacterized protein. (353 aa)
	TERG_05117	Uncharacterized protein. (413 aa)
	TERG_05956	Uncharacterized protein. (401 aa)
	TERG_05590	Uncharacterized protein. (435 aa)
	TERG_05675	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (386 aa)
	TERG_05848	Uncharacterized protein. (243 aa)
	TERG_06410	Epimerase domain-containing protein. (279 aa)
	TERG_06142	Uncharacterized protein. (1024 aa)
	TERG_06203	WD_REPEATS_REGION domain-containing protein. (554 aa)
	TERG_06318	NET domain-containing protein. (260 aa)
	TERG_06375	DUF4211 domain-containing protein. (388 aa)
	TERG_06561	Uncharacterized protein. (719 aa)
	TERG_06789	CDK-activating kinase assembly factor MAT1. (400 aa)
	TERG_06868	Chromatin modification-related protein. (400 aa)
	TERG_06882	HNHc domain-containing protein. (296 aa)
	TERG_06884	Zn(2)-C6 fungal-type domain-containing protein. (916 aa)
	TERG_07105	Uncharacterized protein. (430 aa)
	TERG_07277	Uncharacterized protein. (618 aa)
	TERG_07279	Uncharacterized protein. (625 aa)
	TERG_07401	Uncharacterized protein. (274 aa)
	TERG_07472	DNA repair helicase rad15. (790 aa)
	TERG_08236	Urb2 domain-containing protein. (1061 aa)
	TERG_08391	HNHc domain-containing protein. (287 aa)
	TERG_08431	HMG box domain-containing protein. (298 aa)
	TERG_08534	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (487 aa)

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_00143	TERG_00276	F2SE13	F2SEV7	Uncharacterized protein.	TATA-box-binding protein.	0.473
TERG_00143	TERG_00397	F2SE13	F2SFI3	Uncharacterized protein.	Chromatin modification-related protein.	0.436
TERG_00143	TERG_01941	F2SE13	F2SIV8	Uncharacterized protein.	Uncharacterized protein.	0.528
TERG_00143	TERG_02482	F2SE13	F2SHI3	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.465
TERG_00143	TERG_02860	F2SE13	F2SL97	Uncharacterized protein.	Uncharacterized protein.	0.432
TERG_00143	TERG_02879	F2SE13	F2SLB6	Uncharacterized protein.	Uncharacterized protein.	0.468
TERG_00143	TERG_03108	F2SE13	F2SMK1	Uncharacterized protein.	Uncharacterized protein.	0.411
TERG_00143	TERG_03378	F2SE13	F2SK25	Uncharacterized protein.	DUF3591 domain-containing protein.	0.536
TERG_00143	TERG_04573	F2SE13	F2SNR3	Uncharacterized protein.	TAFII28 domain-containing protein.	0.411
TERG_00143	TERG_04575	F2SE13	F2SNR6	Uncharacterized protein.	TAF domain-containing protein.	0.653
TERG_00143	TERG_05100	F2SE13	F2SR83	Uncharacterized protein.	Uncharacterized protein.	0.510
TERG_00143	TERG_05590	F2SE13	F2SSY7	Uncharacterized protein.	Uncharacterized protein.	0.436
TERG_00143	TERG_05848	F2SE13	F2STQ0	Uncharacterized protein.	Uncharacterized protein.	0.411
TERG_00143	TERG_06203	F2SE13	F2SUQ5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.500
TERG_00143	TERG_06318	F2SE13	F2SV23	Uncharacterized protein.	NET domain-containing protein.	0.413
TERG_00143	TERG_06375	F2SE13	F2SV83	Uncharacterized protein.	DUF4211 domain-containing protein.	0.432
TERG_00143	TERG_07401	F2SE13	F2SXU3	Uncharacterized protein.	Uncharacterized protein.	0.465
TERG_00276	TERG_00143	F2SEV7	F2SE13	TATA-box-binding protein.	Uncharacterized protein.	0.473
TERG_00276	TERG_00337	F2SEV7	F2SF70	TATA-box-binding protein.	TFIIB-type domain-containing protein.	0.999
TERG_00276	TERG_00397	F2SEV7	F2SFI3	TATA-box-binding protein.	Chromatin modification-related protein.	0.473