(32 nodes) Spliceosomal snRNP complex network (Zygosaccharomyces rouxii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5DPF6_ZYGRC	ZYRO0A02948p; Belongs to the DEAD box helicase family. (557 aa)
	C5DPF8_ZYGRC	ZYRO0A03036p. (867 aa)
	C5DPR4_ZYGRC	ZYRO0A05456p. (419 aa)
	C5DQ09_ZYGRC	ZYRO0A07722p. (188 aa)
	C5DR22_ZYGRC	ZYRO0B04950p. (506 aa)
	C5DR32_ZYGRC	ZYRO0B05170p. (249 aa)
	C5DR45_ZYGRC	ZYRO0B05456p. (143 aa)
	C5DRW4_ZYGRC	ZYRO0B11858p. (2155 aa)
	C5DTG6_ZYGRC	ZYRO0C08382p. (304 aa)
	C5DTV3_ZYGRC	ZYRO0C11572p. (2406 aa)
	C5DTY8_ZYGRC	ZYRO0C12386p. (444 aa)
	C5DUH7_ZYGRC	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (150 aa)
	C5DUK1_ZYGRC	ZYRO0C17446p. (112 aa)
	C5DUM7_ZYGRC	ZYRO0C18062p. (342 aa)
	C5DUS5_ZYGRC	ZYRO0D00990p. (99 aa)
	C5DUT0_ZYGRC	ZYRO0D01122p. (466 aa)
	C5DVL6_ZYGRC	ZYRO0D07678p. (964 aa)
	C5DW52_ZYGRC	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (93 aa)
	C5DWF2_ZYGRC	Small nuclear ribonucleoprotein Sm D2. (110 aa)
	C5DWH5_ZYGRC	ZYRO0D14894p. (202 aa)
	C5DWI9_ZYGRC	ZYRO0D15224p. (86 aa)
	C5DXA9_ZYGRC	Small nuclear ribonucleoprotein G. (76 aa)
	C5DYE5_ZYGRC	ZYRO0F12386p. (454 aa)
	C5DYF0_ZYGRC	ZYRO0F12496p. (467 aa)
	C5DYG0_ZYGRC	ZYRO0F12716p. (210 aa)
	C5DYM4_ZYGRC	Small nuclear ribonucleoprotein Sm D3. (100 aa)
	C5DZI6_ZYGRC	ZYRO0G04730p. (1302 aa)
	C5DZN4_ZYGRC	ZYRO0G05852p. (82 aa)
	C5E0R4_ZYGRC	ZYRO0G14960p. (831 aa)
	C5E175_ZYGRC	ZYRO0G18678p. (956 aa)
	C5E4M0_ZYGRC	ZYRO0E07194p. (234 aa)
	C5E4S7_ZYGRC	ZYRO0E08448p. (149 aa)

Your Current Organism:

Zygosaccharomyces rouxii

NCBI taxonomy Id: 559307
Other names: Z. rouxii CBS 732, Zygosaccharomyces rouxii CBS 732

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5DPF6_ZYGRC	C5DPF8_ZYGRC	C5DPF6	C5DPF8	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0A03036p.	0.997
C5DPF6_ZYGRC	C5DPR4_ZYGRC	C5DPF6	C5DPR4	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0A05456p.	0.904
C5DPF6_ZYGRC	C5DQ09_ZYGRC	C5DPF6	C5DQ09	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0A07722p.	0.506
C5DPF6_ZYGRC	C5DR22_ZYGRC	C5DPF6	C5DR22	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0B04950p.	0.771
C5DPF6_ZYGRC	C5DR32_ZYGRC	C5DPF6	C5DR32	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0B05170p.	0.786
C5DPF6_ZYGRC	C5DR45_ZYGRC	C5DPF6	C5DR45	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0B05456p.	0.964
C5DPF6_ZYGRC	C5DRW4_ZYGRC	C5DPF6	C5DRW4	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0B11858p.	0.979
C5DPF6_ZYGRC	C5DTG6_ZYGRC	C5DPF6	C5DTG6	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0C08382p.	0.841
C5DPF6_ZYGRC	C5DTV3_ZYGRC	C5DPF6	C5DTV3	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0C11572p.	0.999
C5DPF6_ZYGRC	C5DTY8_ZYGRC	C5DPF6	C5DTY8	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0C12386p.	0.878
C5DPF6_ZYGRC	C5DUH7_ZYGRC	C5DPF6	C5DUH7	ZYRO0A02948p; Belongs to the DEAD box helicase family.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.992
C5DPF6_ZYGRC	C5DUK1_ZYGRC	C5DPF6	C5DUK1	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0C17446p.	0.754
C5DPF6_ZYGRC	C5DUM7_ZYGRC	C5DPF6	C5DUM7	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0C18062p.	0.723
C5DPF6_ZYGRC	C5DUS5_ZYGRC	C5DPF6	C5DUS5	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0D00990p.	0.959
C5DPF6_ZYGRC	C5DUT0_ZYGRC	C5DPF6	C5DUT0	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0D01122p.	0.867
C5DPF6_ZYGRC	C5DVL6_ZYGRC	C5DPF6	C5DVL6	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0D07678p.	0.795
C5DPF6_ZYGRC	C5DW52_ZYGRC	C5DPF6	C5DW52	ZYRO0A02948p; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.978
C5DPF6_ZYGRC	C5DWF2_ZYGRC	C5DPF6	C5DWF2	ZYRO0A02948p; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D2.	0.987
C5DPF6_ZYGRC	C5DWH5_ZYGRC	C5DPF6	C5DWH5	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0D14894p.	0.974
C5DPF6_ZYGRC	C5DWI9_ZYGRC	C5DPF6	C5DWI9	ZYRO0A02948p; Belongs to the DEAD box helicase family.	ZYRO0D15224p.	0.606