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| | EEB37096.1 | Helix-turn-helix protein, YlxM/p13 family; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. (107 aa) |
| | ffh | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (445 aa) |
| | rpsP | Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (81 aa) |
| | EEB37099.1 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0109 family. (74 aa) |
| | rimM | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (161 aa) |
| | trmD | tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (237 aa) |
| | ylqF | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (278 aa) |
| | EEB37008.1 | Putative methionine--tRNA ligase, beta subunit; KEGG: pgi:PG0170 2.7e-20 metG; methionyl-tRNA synthetase K01874; Psort location: Cytoplasmic, score: 9.98. (131 aa) |
| | EEB37090.1 | Hypothetical protein. (39 aa) |
| | EEB37091.1 | tRNA binding domain protein; KEGG: vvu:VV1_3028 8.6e-12 methionyl-tRNA synthetase K01874; Psort location: Cytoplasmic, score: 8.87. (131 aa) |
| | EEB36937.1 | KEGG: lwe:lwe1961 3.3e-21 protein-tyrosine/serine phosphatase, putative K01104; Psort location: Cytoplasmic, score: 8.87. (240 aa) |
| | rpmB | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (62 aa) |
| | def | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (162 aa) |
| | rnc | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (228 aa) |
| | rpmF | Ribosomal protein L32; Psort location: Extracellular, score: 8.82; Belongs to the bacterial ribosomal protein bL32 family. (59 aa) |
| | EEB36979.1 | KEGG: bcz:BCZK4190 9.0e-13 ribonuclease, Rne/Rng family; Psort location: Cytoplasmic, score: 8.87. (308 aa) |
| | EEB36879.1 | KEGG: tte:TTE2333 6.0e-189 fusA2; translation elongation and release factors (GTPases) K02355; Psort location: Cytoplasmic, score: 9.98. (686 aa) |
| | EEB36849.1 | Trypsin; KEGG: tte:TTE2683 2.5e-57 degQ3; trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain. (407 aa) |
| | EEB36807.1 | Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (188 aa) |
| | EEB36810.1 | Elongation factor Tu domain 2; KEGG: tte:TTE2295 1.8e-52 tufB; GTPases - translation elongation factors K02358; Psort location: Cytoplasmic, score: 9.98. (151 aa) |
| | serS | serine--tRNA ligase; KEGG: mhu:Mhun_2507 9.8e-86 seryl-tRNA synthetase K01875; Psort location: Cytoplasmic, score: 10.00. (429 aa) |
| | EEB36798.1 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (57 aa) |
| | rplI | Ribosomal protein L9 domain protein; KEGG: chy:CHY_1571 0.0033 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889; Psort location: Cytoplasmic, score: 9.98. (103 aa) |
| | tuf | KEGG: tte:TTE2295 2.0e-140 tufB; GTPases - translation elongation factors K02358; Psort location: Cytoplasmic, score: 9.98. (353 aa) |
| | fusA | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] (691 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (185 aa) |
| | rpsL | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (136 aa) |
| | gltX | glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (493 aa) |
| | EEB36635.1 | Hypothetical protein; KEGG: pca:Pcar_2039 6.2e-12 ribonuclease, Rne/Rng family protein; Psort location: Cellwall, score: 9.17. (234 aa) |
| | metG | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (645 aa) |
| | efp | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (185 aa) |
| | secG | Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (66 aa) |
| | rnr | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (700 aa) |
| | smpB | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (147 aa) |
| | gatC | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (92 aa) |
| | gatA | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (469 aa) |
| | gatB | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (473 aa) |
| | ftsY | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). (367 aa) |
| | rpsB | Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family. (257 aa) |
| | tsf | Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (222 aa) |
| | EEB36422.1 | Peptidase, U32 family; KEGG: tte:TTE1257 1.2e-117 Collagenase and related proteases K08303; Psort location: Cytoplasmic, score: 8.87. (410 aa) |
| | EEB36423.1 | O-methyltransferase; KEGG: ctc:CTC01062 1.3e-26 caffeoyl-coA O-methyltransferase K00588. (128 aa) |
| | EEB36424.1 | Hypothetical protein; KEGG: ctc:CTC01062 1.6e-14 caffeoyl-coA O-methyltransferase K00588. (84 aa) |
| | rnj | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (558 aa) |
| | EEB36426.1 | Transcriptional regulator, Fur family; Psort location: Cytoplasmic, score: 9.98; Belongs to the Fur family. (152 aa) |
| | EEB36427.1 | Hypothetical protein; KEGG: par:Psyc_0799 0.0012 gcvT; aminomethyltransferase K00605; Psort location: Cytoplasmic, score: 8.87. (84 aa) |
| | EEB36428.1 | KEGG: ctc:CTC01056 9.8e-15 putative Holliday junction resolvase K07447; Psort location: Cytoplasmic, score: 8.87. (76 aa) |
| | EEB36429.1 | Hypothetical protein; Belongs to the UPF0297 family. (85 aa) |
| | alaS | alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (867 aa) |
| | EEB36431.1 | Transcriptional regulator, Rrf2 family; KEGG: ama:AM656 1.4e-07 aminotransferase, class V K04487; Psort location: Cytoplasmic, score: 8.87. (134 aa) |
| | EEB36432.1 | comEA protein; KEGG: ddi:DDB0231456 0.00013 gnt3; GlcNAc transferase K00726; Psort location: CytoplasmicMembrane, score: 9.82. (208 aa) |
| | EEB36433.1 | Putative iojap-like protein; Psort location: Cytoplasmic, score: 8.87. (61 aa) |
| | EEB36434.1 | Hydrolase, HD family; KEGG: mmy:MSC_0442 4.2e-15 probable nicotinate-nucleotide adenylyltransferase K00969; Psort location: Cytoplasmic, score: 8.87. (186 aa) |
| | nadD | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (197 aa) |
| | EEB36436.1 | RNA-binding protein, YhbY family; KEGG: ddi:DDB0168580 0.0042 hypothetical protein K01969; Psort location: Cytoplasmic, score: 8.87. (95 aa) |
| | cgtA | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. (340 aa) |
| | EEB36438.1 | GTP1/OBG; KEGG: fth:FTH_1800 2.1e-21 GTP1/Obg family GTP-binding protein. (102 aa) |
| | rpmA | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (97 aa) |
| | EEB36440.1 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (57 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | EEB36444.1 | Hypothetical protein; KEGG: mpe:MYPE9170 0.0013 polC; DNA polymerase III subunit alpha K03763; Psort location: Cytoplasmic, score: 8.87. (238 aa) |
| | aspS | aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (585 aa) |
| | EEB36461.1 | Hypothetical protein; KEGG: wbr:WGLp574 0.0097 hisS; histidyl-tRNA synthetase K01892. (91 aa) |
| | EEB36479.1 | Hypothetical protein; KEGG: ctc:CTC00986 3.9e-15 ribosomal large subunit pseudouridine synthase D K06179. (115 aa) |
| | EEB36480.1 | S4 domain protein; KEGG: ctc:CTC00986 7.4e-33 ribosomal large subunit pseudouridine synthase D K06179; Belongs to the pseudouridine synthase RluA family. (195 aa) |
| | EEB36499.1 | Pseudouridine synthase, RluA family; KEGG: cpr:CPR_2089 5.9e-40 pseudouridylate synthase family protein, yabo K06180; Psort location: Cytoplasmic, score: 8.87. (282 aa) |
| | nadK | NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. (261 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (126 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (182 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (236 aa) |
| | rplK | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (144 aa) |
| | nusG | Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination. (197 aa) |
| | secE | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. (60 aa) |
| | rpmG | Ribosomal protein L33; Psort location: Extracellular, score: 8.82; Belongs to the bacterial ribosomal protein bL33 family. (67 aa) |
| | rpsU | Ribosomal protein S21; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial ribosomal protein bS21 family. (71 aa) |
| | htpG | Chaperone protein HtpG; Molecular chaperone. Has ATPase activity. (614 aa) |
| | EEB36251.1 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (308 aa) |
| | EEB36252.1 | Tetratricopeptide repeat protein; KEGG: crp:CRP_042 0.0023 aspartyl/glutamyl-tRNA amidotransferase B subunit K02434; Psort location: Cytoplasmic, score: 8.87. (263 aa) |
| | ileS | isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1076 aa) |
| | tuf-2 | KEGG: tte:TTE2295 6.4e-137 tufB; GTPases - translation elongation factors K02358; Psort location: Cytoplasmic, score: 9.98. (343 aa) |
| | rplY | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (214 aa) |
| | EEB36130.1 | Putative methionine--tRNA ligase, beta subunit; KEGG: pgi:PG0170 2.7e-20 metG; methionyl-tRNA synthetase K01874; Psort location: Cytoplasmic, score: 9.98. (139 aa) |
| | thrS | threonine--tRNA ligase; KEGG: ctc:CTC02286 1.1e-127 thrS, thr; threonyl-tRNA synthetase K01868; Psort location: Cytoplasmic, score: 10.00. (390 aa) |
| | thrS-2 | threonine--tRNA ligase; KEGG: ctc:CTC02286 2.9e-63 thrS, thr; threonyl-tRNA synthetase K01868; Psort location: Cytoplasmic, score: 9.98; Belongs to the class-II aminoacyl-tRNA synthetase family. (230 aa) |
| | lysS | lysine--tRNA ligase; KEGG: tte:TTE2372 5.6e-170 lysU; lysyl-tRNA synthetase class II K04567; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family. (639 aa) |
| | pnp | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (702 aa) |
| | rpsO | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (88 aa) |
| | EEB36087.1 | Hypothetical protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (156 aa) |
| | EEB36088.1 | KEGG: cno:NT01CX_2133 1.6e-30 tRNA pseudouridine synthase B K01718; Psort location: Cytoplasmic, score: 8.87; Belongs to the pseudouridine synthase TruB family. (147 aa) |
| | EEB36089.1 | DHHA1 domain protein; KEGG: gme:Gmet_1578 1.3e-06 PolyA polymerase family protein K00970. (132 aa) |
| | rbfA | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (127 aa) |
| | infB | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (558 aa) |
| | EEB36092.1 | Translation initiation factor IF-2, N-terminal domain protein; KEGG: ddi:DDB0183953 0.00024 hypothetical protein K00791. (110 aa) |
| | EEB36093.1 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (85 aa) |
| | nusA | Transcription termination factor NusA; Participates in both transcription termination and antitermination. (410 aa) |
| | rimP | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. (146 aa) |
| | map | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. (266 aa) |
| | EEB36047.1 | KEGG: bas:BUsg507 2.2e-31 tufB; elongation factor EF-Tu K02358; Psort location: Cytoplasmic, score: 9.98; ORF located using Blastx. (99 aa) |
| | ysxC | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. (195 aa) |
| | lon | Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (776 aa) |
| | clpX | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (402 aa) |
| | clpP | ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (195 aa) |
| | EEB35937.1 | Hypothetical protein; KEGG: ser:SERP1239 2.4e-13 tig; trigger factor K03545; Psort location: Cytoplasmic, score: 8.87. (128 aa) |
| | tig | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Belongs to the FKBP-type PPIase family. Tig subfamily. (281 aa) |
| | EEB35880.1 | Transcriptional repressor of CtsR; Psort location: Cytoplasmic, score: 8.87. (88 aa) |
| | groL | Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (538 aa) |
| | groS | Chaperonin GroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. (100 aa) |
| | rpsI | Ribosomal protein S9; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (146 aa) |
| | EEB35799.1 | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (124 aa) |
| | EEB35801.1 | DnaJ domain protein; Psort location: Extracellular, score: 8.82. (107 aa) |
| | EEB35620.1 | KEGG: tte:TTE2295 4.3e-76 tufB; GTPases - translation elongation factors K02358; Psort location: Cytoplasmic, score: 9.98. (203 aa) |
| | tyrS | tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (439 aa) |
| | raiA | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (176 aa) |
| | secA | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (907 aa) |
| | EEB35421.1 | KEGG: rha:RHA1_ro06404 2.6e-06 prfB; peptide chain release factor RF2 K02836; Psort location: Cytoplasmic, score: 8.87. (115 aa) |
| | EEB35422.1 | Putative peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. (238 aa) |
| | trpS | tryptophan--tRNA ligase; KEGG: bfr:BF4036 6.1e-125 tryptophanyl-tRNA synthetase K01867; Psort location: Cytoplasmic, score: 9.98; Belongs to the class-I aminoacyl-tRNA synthetase family. (365 aa) |
| | valS | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (875 aa) |
| | EEB35433.1 | Methyltransferase domain protein; KEGG: ctc:CTC02292 2.0e-39 methyltransferase K00599. (242 aa) |
| | EEB35434.1 | Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98. (68 aa) |
| | EEB35435.1 | Hydrolase, alpha/beta domain protein; KEGG: mmy:MSC_0837 5.4e-30 pldB; lysophospholipase K01048. (333 aa) |
| | pcp | Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family. (213 aa) |
| | asnS | asparagine--tRNA ligase; KEGG: cno:NT01CX_1233 1.8e-150 asnS; asparaginyl-tRNA synthetase K01893; Psort location: Cytoplasmic, score: 10.00. (462 aa) |
| | leuS | leucine--tRNA ligase; KEGG: gka:GK2842 2.7e-241 leuS; leucyl-tRNA synthetase K01869; Psort location: Cytoplasmic, score: 9.98; Belongs to the class-I aminoacyl-tRNA synthetase family. (802 aa) |
| | EEB35475.1 | Hypothetical protein; KEGG: pto:PTO0778 0.00028 alanyl-tRNA synthetase K01872. (248 aa) |
| | rpsT | Ribosomal protein S20. (68 aa) |
| | lepB | Signal peptidase I; KEGG: bcl:ABC1475 4.2e-30 sipV; signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the peptidase S26 family. (182 aa) |
| | lepA | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (601 aa) |
| | EEB35481.1 | Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (374 aa) |
| | hrcA | Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (332 aa) |
| | grpE | Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...] (181 aa) |
| | dnaK | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (606 aa) |
| | EEB35485.1 | DnaJ domain protein; KEGG: cme:CMJ043C 7.1e-07 phycocyanobilin lyase alpha subunit K02288; Psort location: Cytoplasmic, score: 9.98. (213 aa) |
| | EEB35486.1 | DnaJ domain protein; Psort location: Cytoplasmic, score: 9.65. (140 aa) |
| | yqeV | tRNA methylthiotransferase YqeV; KEGG: ctc:CTC02027 1.7e-104 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87. (432 aa) |
| | proS | proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...] (447 aa) |
| | EEB35494.1 | Anticodon binding domain protein; KEGG: tte:TTE2319 1.2e-31 proS; prolyl-tRNA synthetase K01881; Psort location: Cytoplasmic, score: 9.98. (134 aa) |
| | rho | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (449 aa) |
| | rpmE | Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (68 aa) |
| | EEB35521.1 | DnaJ domain protein; KEGG: cme:CMJ043C 4.1e-07 phycocyanobilin lyase alpha subunit K02288; Psort location: Cytoplasmic, score: 9.65. (317 aa) |
| | clpB | ATP-dependent chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (859 aa) |
| | EEB35286.1 | KEGG: sme:SMb21009 1.3e-15 glpK; probable glycerol kinase, similar to sugar kinases protein K00864. (71 aa) |
| | EEB35287.1 | KEGG: tte:TTE2002 2.1e-83 glpK; glycerol kinase K00864. (308 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (209 aa) |
| | rplD | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. (207 aa) |
| | rplW | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (97 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (95 aa) |
| | rplV | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (115 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (241 aa) |
| | rplP | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (143 aa) |
| | rpmC | Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (68 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (86 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (102 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (180 aa) |
| | rpsN | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa) |
| | rplF | Ribosomal protein L6; KEGG: tdn:Tmden_1412 0.0095 methionyl-tRNA formyltransferase K00604. (95 aa) |
| | rplF-2 | Ribosomal protein L6; Psort location: Cytoplasmic, score: 8.87. (74 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (121 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (168 aa) |
| | rpmD | Ribosomal protein L30. (60 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (147 aa) |
| | secY | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (423 aa) |
| | infA | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (72 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (113 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (134 aa) |
| | rpsD | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (197 aa) |
| | rpoA | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (318 aa) |
| | rplQ | Ribosomal protein L17. (113 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (94 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (74 aa) |
| | infC | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. (188 aa) |
| | rpmI | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (66 aa) |
| | rplT | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (117 aa) |
| | EEB35394.1 | KEGG: mcp:MCAP_0462 5.8e-33 RNA methyltransferase, TrmH family K03437; Psort location: Cytoplasmic, score: 8.87. (243 aa) |
| | pheS | KEGG: tte:TTE1689 2.7e-99 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889; Psort location: Cytoplasmic, score: 10.00. (340 aa) |
| | pheT | KEGG: cac:CAC2356 3.3e-156 pheT; phenylalanyl-tRNA synthetase (beta subunit) K01890; Psort location: Cytoplasmic, score: 9.98. (792 aa) |
| | argS | arginine--tRNA ligase; KEGG: ctc:CTC00966 1.1e-143 argS, arg; arginyl-tRNA synthetase K01887; Psort location: Cytoplasmic, score: 9.65. (535 aa) |
| | rpmH | Ribosomal protein L34; Psort location: Extracellular, score: 8.82; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | EEB35191.1 | Membrane protein insertase, YidC/Oxa1 family; Psort location: CytoplasmicMembrane, score: 9.99. (252 aa) |
| | EEB35192.1 | R3H domain protein; KEGG: mma:MM2623 1.0e-06 exosome complex exonuclease 1 K00989; Psort location: Cytoplasmic, score: 8.87. (281 aa) |
| | EEB35065.1 | Transcriptional repressor of CtsR; Psort location: Cytoplasmic, score: 8.87. (154 aa) |
| | EEB35066.1 | Hypothetical protein; KEGG: fnu:FN0522 0.00080 exonuclease SBCC K03546; Psort location: Cytoplasmic, score: 8.87. (191 aa) |
| | EEB35067.1 | Hypothetical protein; KEGG: lmo:lmo0231 1.4e-14 similar to arginine kinase; Psort location: Cytoplasmic, score: 8.87; Belongs to the ATP:guanido phosphotransferase family. (294 aa) |
| | EEB35068.1 | ATPase family associated with various cellular activities (AAA); KEGG: sab:SAB0475 1.5e-199 clpC; endopeptidase K03696; Psort location: Cytoplasmic, score: 9.98; Belongs to the ClpA/ClpB family. (803 aa) |
