(11 nodes) Mostly uncharacterized, incl. TraC, central domain, and F plasmid transfer operon protein network (Sphingobium chungbukense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KKW90404.1	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology. (936 aa)
	KKW90481.1	Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	KKW90482.1	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	KKW90405.1	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)
	KKW90406.1	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	KKW90407.1	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	KKW90409.1	Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	KKW90410.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	KKW90413.1	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (865 aa)
	KKW90415.1	Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (290 aa)
	KKW90416.1	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)

Your Current Organism:

Sphingobium chungbukense

NCBI taxonomy Id: 56193
Other names: IMSNU 11152, JCM 11454, KCTC 2955, Pseudomonas sp. DJ77, S. chungbukense, Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005, Sphingomonas chungbukensis, Sphingomonas chungbukensis Kim et al. 2000, Sphingomonas sp. DJ77, strain DJ77

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KKW90404.1	KKW90405.1	YP76_20665	YP76_20680	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
KKW90404.1	KKW90406.1	YP76_20665	YP76_20685	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
KKW90404.1	KKW90407.1	YP76_20665	YP76_20690	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
KKW90404.1	KKW90409.1	YP76_20665	YP76_20700	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
KKW90404.1	KKW90410.1	YP76_20665	YP76_20705	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
KKW90404.1	KKW90413.1	YP76_20665	YP76_20720	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
KKW90404.1	KKW90415.1	YP76_20665	YP76_20730	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.	0.820
KKW90404.1	KKW90416.1	YP76_20665	YP76_20735	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
KKW90404.1	KKW90481.1	YP76_20665	YP76_20670	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
KKW90404.1	KKW90482.1	YP76_20665	YP76_20675	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
KKW90405.1	KKW90404.1	YP76_20680	YP76_20665	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
KKW90405.1	KKW90406.1	YP76_20680	YP76_20685	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
KKW90405.1	KKW90407.1	YP76_20680	YP76_20690	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
KKW90405.1	KKW90409.1	YP76_20680	YP76_20700	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
KKW90405.1	KKW90410.1	YP76_20680	YP76_20705	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
KKW90405.1	KKW90413.1	YP76_20680	YP76_20720	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
KKW90405.1	KKW90415.1	YP76_20680	YP76_20730	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.	0.918
KKW90405.1	KKW90416.1	YP76_20680	YP76_20735	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KKW90405.1	KKW90481.1	YP76_20680	YP76_20670	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KKW90405.1	KKW90482.1	YP76_20680	YP76_20675	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864

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