7 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_07337	HECT domain-containing protein. (753 aa)
	A6R68_01106	Uncharacterized protein. (1313 aa)
	A6R68_12383	HECT domain-containing protein. (523 aa)
	A6R68_15419	HECT domain-containing protein. (530 aa)
	A6R68_15420	HECT domain-containing protein. (238 aa)
	A6R68_18552	Uncharacterized protein. (2970 aa)
	A6R68_18551	Uncharacterized protein. (196 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_01106	A6R68_07337	A0A1A6GYG0	A0A1A6GED7	Uncharacterized protein.	HECT domain-containing protein.	0.771
A6R68_01106	A6R68_12383	A0A1A6GYG0	A0A1A6H3Z4	Uncharacterized protein.	HECT domain-containing protein.	0.577
A6R68_01106	A6R68_15419	A0A1A6GYG0	A0A1A6H6V1	Uncharacterized protein.	HECT domain-containing protein.	0.577
A6R68_01106	A6R68_15420	A0A1A6GYG0	A0A1A6H8V8	Uncharacterized protein.	HECT domain-containing protein.	0.577
A6R68_01106	A6R68_18551	A0A1A6GYG0	A0A1A6HM63	Uncharacterized protein.	Uncharacterized protein.	0.725
A6R68_01106	A6R68_18552	A0A1A6GYG0	A0A1A6HL93	Uncharacterized protein.	Uncharacterized protein.	0.725
A6R68_07337	A6R68_01106	A0A1A6GED7	A0A1A6GYG0	HECT domain-containing protein.	Uncharacterized protein.	0.771
A6R68_07337	A6R68_12383	A0A1A6GED7	A0A1A6H3Z4	HECT domain-containing protein.	HECT domain-containing protein.	0.799
A6R68_07337	A6R68_15419	A0A1A6GED7	A0A1A6H6V1	HECT domain-containing protein.	HECT domain-containing protein.	0.803
A6R68_07337	A6R68_15420	A0A1A6GED7	A0A1A6H8V8	HECT domain-containing protein.	HECT domain-containing protein.	0.803
A6R68_07337	A6R68_18551	A0A1A6GED7	A0A1A6HM63	HECT domain-containing protein.	Uncharacterized protein.	0.649
A6R68_07337	A6R68_18552	A0A1A6GED7	A0A1A6HL93	HECT domain-containing protein.	Uncharacterized protein.	0.513
A6R68_12383	A6R68_01106	A0A1A6H3Z4	A0A1A6GYG0	HECT domain-containing protein.	Uncharacterized protein.	0.577
A6R68_12383	A6R68_07337	A0A1A6H3Z4	A0A1A6GED7	HECT domain-containing protein.	HECT domain-containing protein.	0.799
A6R68_12383	A6R68_18551	A0A1A6H3Z4	A0A1A6HM63	HECT domain-containing protein.	Uncharacterized protein.	0.799
A6R68_12383	A6R68_18552	A0A1A6H3Z4	A0A1A6HL93	HECT domain-containing protein.	Uncharacterized protein.	0.799
A6R68_15419	A6R68_01106	A0A1A6H6V1	A0A1A6GYG0	HECT domain-containing protein.	Uncharacterized protein.	0.577
A6R68_15419	A6R68_07337	A0A1A6H6V1	A0A1A6GED7	HECT domain-containing protein.	HECT domain-containing protein.	0.803
A6R68_15419	A6R68_15420	A0A1A6H6V1	A0A1A6H8V8	HECT domain-containing protein.	HECT domain-containing protein.	0.928
A6R68_15419	A6R68_18551	A0A1A6H6V1	A0A1A6HM63	HECT domain-containing protein.	Uncharacterized protein.	0.799