68 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_11289	Uncharacterized protein. (405 aa)
	A6R68_11106	Homeobox domain-containing protein. (234 aa)
	A6R68_10547	Uncharacterized protein. (156 aa)
	A6R68_10858	Homeobox domain-containing protein. (246 aa)
	A6R68_11108	Homeobox domain-containing protein. (424 aa)
	A6R68_10901	Homeobox domain-containing protein. (184 aa)
	A6R68_09693	Uncharacterized protein. (100 aa)
	A6R68_08934	BHLH domain-containing protein. (215 aa)
	A6R68_08929	Uncharacterized protein. (380 aa)
	A6R68_08151	BHLH domain-containing protein. (362 aa)
	A6R68_08188	BHLH domain-containing protein. (185 aa)
	A6R68_07878	Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX. (406 aa)
	A6R68_07113	Uncharacterized protein. (623 aa)
	A6R68_06230	Homeobox domain-containing protein. (337 aa)
	A6R68_06616	Fork-head domain-containing protein. (353 aa)
	A6R68_06012	ETS domain-containing protein. (229 aa)
	A6R68_05326	Runt domain-containing protein. (90 aa)
	A6R68_04270	Fork-head domain-containing protein. (367 aa)
	A6R68_04701	Homeobox domain-containing protein. (283 aa)
	A6R68_03248	Uncharacterized protein. (448 aa)
	A6R68_03080	RunxI domain-containing protein. (177 aa)
	A6R68_02956	T-box_assoc domain-containing protein. (670 aa)
	A6R68_02665	Uncharacterized protein. (161 aa)
	A6R68_01945	LID domain-containing protein. (411 aa)
	A6R68_01903	Uncharacterized protein. (746 aa)
	A6R68_01345	LIM zinc-binding domain-containing protein. (110 aa)
	A6R68_01527	Homeobox domain-containing protein. (342 aa)
	A6R68_01010	Uncharacterized protein. (428 aa)
	A6R68_13380	Fork-head domain-containing protein. (467 aa)
	A6R68_13772	BHLH domain-containing protein. (393 aa)
	A6R68_12526	Uncharacterized protein. (344 aa)
	A6R68_12494	Uncharacterized protein. (404 aa)
	A6R68_12607	Homeobox domain-containing protein. (359 aa)
	A6R68_12781	BHLH domain-containing protein. (452 aa)
	A6R68_15706	BHLH domain-containing protein. (217 aa)
	A6R68_15707	BHLH domain-containing protein. (351 aa)
	A6R68_14923	Uncharacterized protein. (574 aa)
	A6R68_14672	Uncharacterized protein. (632 aa)
	A6R68_16798	BHLH domain-containing protein. (329 aa)
	A6R68_16983	BHLH domain-containing protein. (277 aa)
	A6R68_17081	Homeobox domain-containing protein. (207 aa)
	A6R68_16365	BZIP domain-containing protein. (413 aa)
	A6R68_16294	TBX domain-containing protein. (614 aa)
	A6R68_16443	Uncharacterized protein. (1015 aa)
	A6R68_16293	Uncharacterized protein. (172 aa)
	A6R68_16103	Uncharacterized protein. (471 aa)
	A6R68_16425	Uncharacterized protein. (614 aa)
	A6R68_19465	Homeobox domain-containing protein. (355 aa)
	A6R68_19010	Homeobox domain-containing protein. (232 aa)
	A6R68_18667	RunxI domain-containing protein. (233 aa)
	A6R68_18946	Uncharacterized protein. (474 aa)
	A6R68_18661	Runt domain-containing protein. (165 aa)
	A6R68_21876	MYND-type domain-containing protein. (341 aa)
	A6R68_21149	WD_REPEATS_REGION domain-containing protein. (398 aa)
	A6R68_21467	C2H2-type domain-containing protein. (127 aa)
	A6R68_20655	Uncharacterized protein. (464 aa)
	A6R68_20637	Uncharacterized protein. (480 aa)
	A6R68_20661	Fork-head domain-containing protein. (479 aa)
	A6R68_23767	BHLH domain-containing protein. (179 aa)
	A6R68_24123	BHLH domain-containing protein. (188 aa)
	A6R68_23363	DUF4821 domain-containing protein. (161 aa)
	A6R68_24038	TAFH domain-containing protein. (180 aa)
	A6R68_23453	Homeobox domain-containing protein. (317 aa)
	A6R68_23269	TBX domain-containing protein. (713 aa)
	A6R68_23740	Uncharacterized protein. (422 aa)
	A6R68_23648	BHLH domain-containing protein. (210 aa)
	A6R68_23138	Uncharacterized protein. (204 aa)
	A6R68_23270	Uncharacterized protein. (133 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_01010	A6R68_03080	A0A1A6GXW6	A0A1A6GR74	Uncharacterized protein.	RunxI domain-containing protein.	0.612
A6R68_01010	A6R68_05326	A0A1A6GXW6	A0A1A6GJU1	Uncharacterized protein.	Runt domain-containing protein.	0.612
A6R68_01010	A6R68_07878	A0A1A6GXW6	A0A1A6GBL0	Uncharacterized protein.	Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX.	0.612
A6R68_01010	A6R68_12494	A0A1A6GXW6	A0A1A6H3N1	Uncharacterized protein.	Uncharacterized protein.	0.473
A6R68_01010	A6R68_14923	A0A1A6GXW6	A0A1A6H8A4	Uncharacterized protein.	Uncharacterized protein.	0.932
A6R68_01010	A6R68_16425	A0A1A6GXW6	A0A1A6HHJ6	Uncharacterized protein.	Uncharacterized protein.	0.718
A6R68_01010	A6R68_18661	A0A1A6GXW6	A0A1A6HMK6	Uncharacterized protein.	Runt domain-containing protein.	0.612
A6R68_01010	A6R68_18667	A0A1A6GXW6	A0A1A6HK97	Uncharacterized protein.	RunxI domain-containing protein.	0.612
A6R68_01010	A6R68_20655	A0A1A6GXW6	A0A1A6HRP1	Uncharacterized protein.	Uncharacterized protein.	0.425
A6R68_01010	A6R68_21876	A0A1A6GXW6	A0A1A6HQC4	Uncharacterized protein.	MYND-type domain-containing protein.	0.711
A6R68_01010	A6R68_23138	A0A1A6GXW6	A0A1A6HY00	Uncharacterized protein.	Uncharacterized protein.	0.473
A6R68_01010	A6R68_24038	A0A1A6GXW6	A0A1A6HW63	Uncharacterized protein.	TAFH domain-containing protein.	0.711
A6R68_01345	A6R68_01945	A0A1A6GUU8	A0A1A6GT51	LIM zinc-binding domain-containing protein.	LID domain-containing protein.	0.991
A6R68_01345	A6R68_03080	A0A1A6GUU8	A0A1A6GR74	LIM zinc-binding domain-containing protein.	RunxI domain-containing protein.	0.645
A6R68_01345	A6R68_05326	A0A1A6GUU8	A0A1A6GJU1	LIM zinc-binding domain-containing protein.	Runt domain-containing protein.	0.645
A6R68_01345	A6R68_06012	A0A1A6GUU8	A0A1A6GI34	LIM zinc-binding domain-containing protein.	ETS domain-containing protein.	0.461
A6R68_01345	A6R68_07878	A0A1A6GUU8	A0A1A6GBL0	LIM zinc-binding domain-containing protein.	Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX.	0.645
A6R68_01345	A6R68_08188	A0A1A6GUU8	A0A1A6G5W3	LIM zinc-binding domain-containing protein.	BHLH domain-containing protein.	0.425
A6R68_01345	A6R68_08929	A0A1A6GUU8	A0A1A6G3I9	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.885
A6R68_01345	A6R68_08934	A0A1A6GUU8	A0A1A6G2B2	LIM zinc-binding domain-containing protein.	BHLH domain-containing protein.	0.414