16 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_11275	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (391 aa)
	A6R68_09910	IRG-type G domain-containing protein. (295 aa)
	A6R68_08578	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (316 aa)
	A6R68_07828	Uncharacterized protein. (1072 aa)
	A6R68_05516	IRG-type G domain-containing protein. (293 aa)
	A6R68_05319	Protein kinase domain-containing protein. (298 aa)
	A6R68_01677	Uncharacterized protein. (74 aa)
	A6R68_15880	IRG-type G domain-containing protein. (356 aa)
	A6R68_12475	Calponin-homology (CH) domain-containing protein. (330 aa)
	A6R68_15152	Uncharacterized protein. (792 aa)
	A6R68_17055	Uncharacterized protein. (1227 aa)
	A6R68_18196	GATA-type domain-containing protein. (266 aa)
	A6R68_21289	Uncharacterized protein. (185 aa)
	A6R68_21324	Uncharacterized protein. (695 aa)
	A6R68_24037	IRG-type G domain-containing protein. (431 aa)
	A6R68_23260	Uncharacterized protein. (335 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_01677	A6R68_05319	A0A1A6GVX2	A0A1A6GK76	Uncharacterized protein.	Protein kinase domain-containing protein.	0.651
A6R68_01677	A6R68_05516	A0A1A6GVX2	A0A1A6GJN1	Uncharacterized protein.	IRG-type G domain-containing protein.	0.651
A6R68_01677	A6R68_08578	A0A1A6GVX2	A0A1A6G2B8	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.651
A6R68_01677	A6R68_09910	A0A1A6GVX2	A0A1A6FZH0	Uncharacterized protein.	IRG-type G domain-containing protein.	0.651
A6R68_01677	A6R68_11275	A0A1A6GVX2	A0A1A6FUG8	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.813
A6R68_01677	A6R68_12475	A0A1A6GVX2	A0A1A6H5R9	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.651
A6R68_01677	A6R68_15152	A0A1A6GVX2	A0A1A6H7N8	Uncharacterized protein.	Uncharacterized protein.	0.651
A6R68_01677	A6R68_15880	A0A1A6GVX2	A0A1A6H5I4	Uncharacterized protein.	IRG-type G domain-containing protein.	0.651
A6R68_01677	A6R68_17055	A0A1A6GVX2	A0A1A6HE04	Uncharacterized protein.	Uncharacterized protein.	0.651
A6R68_01677	A6R68_24037	A0A1A6GVX2	A0A1A6HUS0	Uncharacterized protein.	IRG-type G domain-containing protein.	0.651
A6R68_05319	A6R68_01677	A0A1A6GK76	A0A1A6GVX2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.651
A6R68_05319	A6R68_07828	A0A1A6GK76	A0A1A6GBG2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.826
A6R68_05319	A6R68_11275	A0A1A6GK76	A0A1A6FUG8	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.797
A6R68_05319	A6R68_17055	A0A1A6GK76	A0A1A6HE04	Protein kinase domain-containing protein.	Uncharacterized protein.	0.747
A6R68_05319	A6R68_18196	A0A1A6GK76	A0A1A6HN84	Protein kinase domain-containing protein.	GATA-type domain-containing protein.	0.805
A6R68_05319	A6R68_21289	A0A1A6GK76	A0A1A6HPY0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.646
A6R68_05319	A6R68_21324	A0A1A6GK76	A0A1A6HR43	Protein kinase domain-containing protein.	Uncharacterized protein.	0.805
A6R68_05319	A6R68_23260	A0A1A6GK76	A0A1A6HWD6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.646
A6R68_05516	A6R68_01677	A0A1A6GJN1	A0A1A6GVX2	IRG-type G domain-containing protein.	Uncharacterized protein.	0.651
A6R68_05516	A6R68_07828	A0A1A6GJN1	A0A1A6GBG2	IRG-type G domain-containing protein.	Uncharacterized protein.	0.550