21 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_05521	PSI domain-containing protein. (169 aa)
	A6R68_22589	Sema domain-containing protein. (396 aa)
	A6R68_21417	Sema domain-containing protein. (1957 aa)
	A6R68_18431	Plexin_cytopl domain-containing protein. (159 aa)
	A6R68_19160	Sema domain-containing protein. (1858 aa)
	A6R68_14288	Plexin_cytopl domain-containing protein. (151 aa)
	A6R68_12361	Sema domain-containing protein. (1813 aa)
	A6R68_00115	Sema domain-containing protein. (2008 aa)
	A6R68_00391	Plexin_cytopl domain-containing protein. (360 aa)
	A6R68_00320	IPT/TIG domain-containing protein. (206 aa)
	A6R68_01453	Sema domain-containing protein. (238 aa)
	A6R68_05522	IPT/TIG domain-containing protein. (90 aa)
	A6R68_05955	Uncharacterized protein. (705 aa)
	A6R68_06582	Sema domain-containing protein. (498 aa)
	A6R68_06580	Sema domain-containing protein. (1683 aa)
	A6R68_07795	Plexin_cytopl domain-containing protein. (161 aa)
	A6R68_07796	Plexin_cytopl domain-containing protein. (81 aa)
	A6R68_09400	Uncharacterized protein. (1430 aa)
	A6R68_09399	Sema domain-containing protein. (474 aa)
	A6R68_11549	Uncharacterized protein. (849 aa)
	A6R68_11548	Plexin_cytopl domain-containing protein. (209 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_00115	A6R68_09399	A0A1A6H0Z0	A0A1A6FZY8	Sema domain-containing protein.	Sema domain-containing protein.	0.406
A6R68_00115	A6R68_09400	A0A1A6H0Z0	A0A1A6G261	Sema domain-containing protein.	Uncharacterized protein.	0.406
A6R68_00115	A6R68_12361	A0A1A6H0Z0	A0A1A6H395	Sema domain-containing protein.	Sema domain-containing protein.	0.823
A6R68_00115	A6R68_19160	A0A1A6H0Z0	A0A1A6HJK2	Sema domain-containing protein.	Sema domain-containing protein.	0.813
A6R68_00115	A6R68_21417	A0A1A6H0Z0	A0A1A6HQ58	Sema domain-containing protein.	Sema domain-containing protein.	0.434
A6R68_00320	A6R68_05521	A0A1A6GYS7	A0A1A6GI40	IPT/TIG domain-containing protein.	PSI domain-containing protein.	0.915
A6R68_00320	A6R68_07795	A0A1A6GYS7	A0A1A6GD20	IPT/TIG domain-containing protein.	Plexin_cytopl domain-containing protein.	0.867
A6R68_00320	A6R68_07796	A0A1A6GYS7	A0A1A6GBQ5	IPT/TIG domain-containing protein.	Plexin_cytopl domain-containing protein.	0.567
A6R68_00320	A6R68_09399	A0A1A6GYS7	A0A1A6FZY8	IPT/TIG domain-containing protein.	Sema domain-containing protein.	0.947
A6R68_00320	A6R68_09400	A0A1A6GYS7	A0A1A6G261	IPT/TIG domain-containing protein.	Uncharacterized protein.	0.632
A6R68_00320	A6R68_11548	A0A1A6GYS7	A0A1A6FTQ4	IPT/TIG domain-containing protein.	Plexin_cytopl domain-containing protein.	0.946
A6R68_00320	A6R68_11549	A0A1A6GYS7	A0A1A6FW13	IPT/TIG domain-containing protein.	Uncharacterized protein.	0.644
A6R68_00320	A6R68_14288	A0A1A6GYS7	A0A1A6HA49	IPT/TIG domain-containing protein.	Plexin_cytopl domain-containing protein.	0.887
A6R68_00320	A6R68_18431	A0A1A6GYS7	A0A1A6HMH7	IPT/TIG domain-containing protein.	Plexin_cytopl domain-containing protein.	0.889
A6R68_00320	A6R68_22589	A0A1A6GYS7	A0A1A6HYV6	IPT/TIG domain-containing protein.	Sema domain-containing protein.	0.889
A6R68_00391	A6R68_09399	A0A1A6H0C3	A0A1A6FZY8	Plexin_cytopl domain-containing protein.	Sema domain-containing protein.	0.632
A6R68_00391	A6R68_09400	A0A1A6H0C3	A0A1A6G261	Plexin_cytopl domain-containing protein.	Uncharacterized protein.	0.632
A6R68_00391	A6R68_11548	A0A1A6H0C3	A0A1A6FTQ4	Plexin_cytopl domain-containing protein.	Plexin_cytopl domain-containing protein.	0.676
A6R68_00391	A6R68_14288	A0A1A6H0C3	A0A1A6HA49	Plexin_cytopl domain-containing protein.	Plexin_cytopl domain-containing protein.	0.451
A6R68_00391	A6R68_18431	A0A1A6H0C3	A0A1A6HMH7	Plexin_cytopl domain-containing protein.	Plexin_cytopl domain-containing protein.	0.426