7 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_17415	Uncharacterized protein. (744 aa)
	A6R68_13395	Uncharacterized protein. (272 aa)
	A6R68_19695	DUF4596 domain-containing protein. (1287 aa)
	A6R68_03287	Uncharacterized protein. (190 aa)
	A6R68_11370	Uncharacterized protein. (594 aa)
	A6R68_11368	Uncharacterized protein. (405 aa)
	A6R68_13398	Uncharacterized protein. (432 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_03287	A6R68_11368	A0A1A6GPP8	A0A1A6FVB7	Uncharacterized protein.	Uncharacterized protein.	0.965
A6R68_03287	A6R68_11370	A0A1A6GPP8	A0A1A6FWD5	Uncharacterized protein.	Uncharacterized protein.	0.965
A6R68_03287	A6R68_13395	A0A1A6GPP8	A0A1A6H2I3	Uncharacterized protein.	Uncharacterized protein.	0.993
A6R68_03287	A6R68_13398	A0A1A6GPP8	A0A1A6H0A7	Uncharacterized protein.	Uncharacterized protein.	0.997
A6R68_03287	A6R68_17415	A0A1A6GPP8	A0A1A6HC34	Uncharacterized protein.	Uncharacterized protein.	0.984
A6R68_11368	A6R68_03287	A0A1A6FVB7	A0A1A6GPP8	Uncharacterized protein.	Uncharacterized protein.	0.965
A6R68_11368	A6R68_11370	A0A1A6FVB7	A0A1A6FWD5	Uncharacterized protein.	Uncharacterized protein.	0.966
A6R68_11368	A6R68_13395	A0A1A6FVB7	A0A1A6H2I3	Uncharacterized protein.	Uncharacterized protein.	0.997
A6R68_11368	A6R68_13398	A0A1A6FVB7	A0A1A6H0A7	Uncharacterized protein.	Uncharacterized protein.	0.998
A6R68_11368	A6R68_17415	A0A1A6FVB7	A0A1A6HC34	Uncharacterized protein.	Uncharacterized protein.	0.984
A6R68_11370	A6R68_03287	A0A1A6FWD5	A0A1A6GPP8	Uncharacterized protein.	Uncharacterized protein.	0.965
A6R68_11370	A6R68_11368	A0A1A6FWD5	A0A1A6FVB7	Uncharacterized protein.	Uncharacterized protein.	0.966
A6R68_11370	A6R68_13395	A0A1A6FWD5	A0A1A6H2I3	Uncharacterized protein.	Uncharacterized protein.	0.984
A6R68_11370	A6R68_13398	A0A1A6FWD5	A0A1A6H0A7	Uncharacterized protein.	Uncharacterized protein.	0.984
A6R68_11370	A6R68_17415	A0A1A6FWD5	A0A1A6HC34	Uncharacterized protein.	Uncharacterized protein.	0.998
A6R68_13395	A6R68_03287	A0A1A6H2I3	A0A1A6GPP8	Uncharacterized protein.	Uncharacterized protein.	0.993
A6R68_13395	A6R68_11368	A0A1A6H2I3	A0A1A6FVB7	Uncharacterized protein.	Uncharacterized protein.	0.997
A6R68_13395	A6R68_11370	A0A1A6H2I3	A0A1A6FWD5	Uncharacterized protein.	Uncharacterized protein.	0.984
A6R68_13395	A6R68_13398	A0A1A6H2I3	A0A1A6H0A7	Uncharacterized protein.	Uncharacterized protein.	0.999
A6R68_13395	A6R68_17415	A0A1A6H2I3	A0A1A6HC34	Uncharacterized protein.	Uncharacterized protein.	0.998