48 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_10487	Uncharacterized protein. (390 aa)
	A6R68_10592	Uncharacterized protein. (414 aa)
	A6R68_08929	Uncharacterized protein. (380 aa)
	A6R68_07476	Uncharacterized protein. (410 aa)
	A6R68_07234	Uncharacterized protein. (802 aa)
	A6R68_06028	Uncharacterized protein. (445 aa)
	A6R68_05899	Nuclear receptor domain-containing protein. (73 aa)
	A6R68_05949	Nuclear receptor domain-containing protein. (291 aa)
	A6R68_05115	GATA-type domain-containing protein. (156 aa)
	A6R68_03584	Nuclear receptor domain-containing protein. (82 aa)
	A6R68_03534	Nuclear receptor domain-containing protein. (91 aa)
	A6R68_01887	Nuclear receptor domain-containing protein. (181 aa)
	A6R68_01068	Uncharacterized protein. (458 aa)
	A6R68_01387	Uncharacterized protein. (522 aa)
	A6R68_00736	Uncharacterized protein. (372 aa)
	A6R68_00373	Uncharacterized protein. (459 aa)
	A6R68_00735	Nuclear receptor domain-containing protein. (77 aa)
	PPARG	Peroxisome proliferator-activated receptor gamma; Nuclear receptor that binds peroxisome proliferators such as hypolipidemic drugs and fatty acids. Once activated by a ligand, the nuclear receptor binds to DNA specific PPAR response elements (PPRE) and modulates the transcription of its target genes, such as acyl-CoA oxidase. It therefore controls the peroxisomal beta-oxidation pathway of fatty acids. Key regulator of adipocyte differentiation and glucose homeostasis. ARF6 acts as a key regulator of the tissue-specific adipocyte P2 (aP2) enhancer. Acts as a critical regulator of gut ho [...] (176 aa)
	A6R68_13070	Uncharacterized protein. (295 aa)
	A6R68_12494	Uncharacterized protein. (404 aa)
	A6R68_12786	Uncharacterized protein. (426 aa)
	A6R68_15174	Uncharacterized protein. (579 aa)
	A6R68_15175	Nuclear receptor domain-containing protein. (400 aa)
	A6R68_14587	Uncharacterized protein. (484 aa)
	A6R68_18003	Uncharacterized protein. (436 aa)
	A6R68_17537	Nuclear receptor domain-containing protein. (588 aa)
	A6R68_17492	Uncharacterized protein. (494 aa)
	A6R68_17422	Uncharacterized protein. (513 aa)
	A6R68_17277	Uncharacterized protein. (596 aa)
	A6R68_16053	Uncharacterized protein. (474 aa)
	A6R68_18877	Uncharacterized protein. (629 aa)
	A6R68_22072	Nuclear receptor domain-containing protein. (98 aa)
	A6R68_18196	GATA-type domain-containing protein. (266 aa)
	A6R68_21755	Nuclear receptor domain-containing protein. (68 aa)
	A6R68_21324	Uncharacterized protein. (695 aa)
	A6R68_20655	Uncharacterized protein. (464 aa)
	A6R68_20637	Uncharacterized protein. (480 aa)
	A6R68_21049	Uncharacterized protein. (456 aa)
	A6R68_20730	Uncharacterized protein. (600 aa)
	A6R68_20299	Uncharacterized protein. (422 aa)
	A6R68_20162	Uncharacterized protein. (439 aa)
	A6R68_23737	Uncharacterized protein. (420 aa)
	A6R68_23988	Uncharacterized protein. (465 aa)
	A6R68_23138	Uncharacterized protein. (204 aa)
	A6R68_22858	Uncharacterized protein. (468 aa)
	A6R68_22958	Uncharacterized protein. (445 aa)
	A6R68_22735	GATA-type domain-containing protein. (545 aa)
	A6R68_22240	Uncharacterized protein. (440 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_00373	A6R68_00735	A0A1A6GY42	A0A1A6GYP9	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.894
A6R68_00373	A6R68_00736	A0A1A6GY42	A0A1A6GX36	Uncharacterized protein.	Uncharacterized protein.	0.908
A6R68_00373	A6R68_01068	A0A1A6GY42	A0A1A6GWR4	Uncharacterized protein.	Uncharacterized protein.	0.923
A6R68_00373	A6R68_01387	A0A1A6GY42	A0A1A6GWS6	Uncharacterized protein.	Uncharacterized protein.	0.812
A6R68_00373	A6R68_03534	A0A1A6GY42	A0A1A6GQG2	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.942
A6R68_00373	A6R68_06028	A0A1A6GY42	A0A1A6GGT4	Uncharacterized protein.	Uncharacterized protein.	0.984
A6R68_00373	A6R68_07234	A0A1A6GY42	A0A1A6GG10	Uncharacterized protein.	Uncharacterized protein.	0.873
A6R68_00373	A6R68_07476	A0A1A6GY42	A0A1A6GFA2	Uncharacterized protein.	Uncharacterized protein.	0.801
A6R68_00373	A6R68_14587	A0A1A6GY42	A0A1A6H998	Uncharacterized protein.	Uncharacterized protein.	0.627
A6R68_00373	A6R68_15174	A0A1A6GY42	A0A1A6H6Q8	Uncharacterized protein.	Uncharacterized protein.	0.598
A6R68_00373	A6R68_15175	A0A1A6GY42	A0A1A6H7K9	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.973
A6R68_00373	A6R68_17277	A0A1A6GY42	A0A1A6HEB7	Uncharacterized protein.	Uncharacterized protein.	0.873
A6R68_00373	A6R68_17492	A0A1A6GY42	A0A1A6HCR3	Uncharacterized protein.	Uncharacterized protein.	0.968
A6R68_00373	A6R68_18877	A0A1A6GY42	A0A1A6HKB7	Uncharacterized protein.	Uncharacterized protein.	0.453
A6R68_00373	A6R68_20730	A0A1A6GY42	A0A1A6HSW4	Uncharacterized protein.	Uncharacterized protein.	0.933
A6R68_00373	A6R68_21049	A0A1A6GY42	A0A1A6HSP8	Uncharacterized protein.	Uncharacterized protein.	0.876
A6R68_00373	A6R68_22072	A0A1A6GY42	A0A1A6HN79	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.887
A6R68_00373	A6R68_22240	A0A1A6GY42	A0A1A6I0C3	Uncharacterized protein.	Uncharacterized protein.	0.947
A6R68_00373	A6R68_22958	A0A1A6GY42	A0A1A6HZB3	Uncharacterized protein.	Uncharacterized protein.	0.957
A6R68_00373	PPARG	A0A1A6GY42	A0A1A6GYV9	Uncharacterized protein.	Peroxisome proliferator-activated receptor gamma; Nuclear receptor that binds peroxisome proliferators such as hypolipidemic drugs and fatty acids. Once activated by a ligand, the nuclear receptor binds to DNA specific PPAR response elements (PPRE) and modulates the transcription of its target genes, such as acyl-CoA oxidase. It therefore controls the peroxisomal beta-oxidation pathway of fatty acids. Key regulator of adipocyte differentiation and glucose homeostasis. ARF6 acts as a key regulator of the tissue-specific adipocyte P2 (aP2) enhancer. Acts as a critical regulator of gut ho [...]	0.965