(11 nodes) Zinc finger, ZZ-type superfamily network (Neotoma lepida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_22334	ZZ-type domain-containing protein. (912 aa)
	A6R68_20963	Uncharacterized protein. (1039 aa)
	A6R68_14275	Transcriptional adapter. (420 aa)
	A6R68_14621	ZZ-type domain-containing protein. (274 aa)
	A6R68_03410	Uncharacterized protein. (571 aa)
	A6R68_02611	Uncharacterized protein. (2312 aa)
	A6R68_12009	ZZ-type domain-containing protein. (172 aa)
	A6R68_00746	Uncharacterized protein. (1848 aa)
	A6R68_02287	ZZ-type domain-containing protein. (1737 aa)
	A6R68_07076	ZZ-type domain-containing protein. (299 aa)
	A6R68_04527	Uncharacterized protein. (782 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_00746	A6R68_02287	A0A1A6GWJ2	A0A1A6GS81	Uncharacterized protein.	ZZ-type domain-containing protein.	0.686
A6R68_00746	A6R68_02611	A0A1A6GWJ2	A0A1A6GRL0	Uncharacterized protein.	Uncharacterized protein.	0.997
A6R68_02287	A6R68_00746	A0A1A6GS81	A0A1A6GWJ2	ZZ-type domain-containing protein.	Uncharacterized protein.	0.686
A6R68_02287	A6R68_02611	A0A1A6GS81	A0A1A6GRL0	ZZ-type domain-containing protein.	Uncharacterized protein.	0.834
A6R68_02611	A6R68_00746	A0A1A6GRL0	A0A1A6GWJ2	Uncharacterized protein.	Uncharacterized protein.	0.997
A6R68_02611	A6R68_02287	A0A1A6GRL0	A0A1A6GS81	Uncharacterized protein.	ZZ-type domain-containing protein.	0.834
A6R68_04527	A6R68_14621	A0A1A6GKY1	A0A1A6H972	Uncharacterized protein.	ZZ-type domain-containing protein.	0.978
A6R68_04527	A6R68_20963	A0A1A6GKY1	A0A1A6HQU5	Uncharacterized protein.	Uncharacterized protein.	0.925
A6R68_07076	A6R68_12009	A0A1A6GEV6	A0A1A6H500	ZZ-type domain-containing protein.	ZZ-type domain-containing protein.	0.747
A6R68_07076	A6R68_22334	A0A1A6GEV6	A0A1A6I117	ZZ-type domain-containing protein.	ZZ-type domain-containing protein.	0.659
A6R68_12009	A6R68_07076	A0A1A6H500	A0A1A6GEV6	ZZ-type domain-containing protein.	ZZ-type domain-containing protein.	0.747
A6R68_12009	A6R68_22334	A0A1A6H500	A0A1A6I117	ZZ-type domain-containing protein.	ZZ-type domain-containing protein.	0.455
A6R68_14621	A6R68_04527	A0A1A6H972	A0A1A6GKY1	ZZ-type domain-containing protein.	Uncharacterized protein.	0.978
A6R68_20963	A6R68_04527	A0A1A6HQU5	A0A1A6GKY1	Uncharacterized protein.	Uncharacterized protein.	0.925
A6R68_22334	A6R68_07076	A0A1A6I117	A0A1A6GEV6	ZZ-type domain-containing protein.	ZZ-type domain-containing protein.	0.659
A6R68_22334	A6R68_12009	A0A1A6I117	A0A1A6H500	ZZ-type domain-containing protein.	ZZ-type domain-containing protein.	0.455