23 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_20472	AAA domain-containing protein. (346 aa)
	A6R68_20378	DNA_pol_B domain-containing protein. (80 aa)
	A6R68_23815	BTB domain-containing protein. (768 aa)
	A6R68_22420	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (597 aa)
	A6R68_22295	Uncharacterized protein. (361 aa)
	A6R68_00249	PCNA_C domain-containing protein. (96 aa)
	A6R68_06850	UmuC domain-containing protein. (731 aa)
	A6R68_00915	BTB domain-containing protein. (479 aa)
	A6R68_02319	ATPase_AAA_core domain-containing protein. (1581 aa)
	A6R68_02225	UmuC domain-containing protein. (270 aa)
	A6R68_01992	ATPase_AAA_core domain-containing protein. (116 aa)
	A6R68_04835	Uncharacterized protein. (137 aa)
	A6R68_05099	Uncharacterized protein. (96 aa)
	A6R68_05032	Replication factor C subunit 1. (963 aa)
	A6R68_06749	KxDL domain-containing protein. (177 aa)
	A6R68_08373	DUF4683 domain-containing protein. (1402 aa)
	A6R68_09992	RPA_C domain-containing protein. (174 aa)
	A6R68_10640	RPA_C domain-containing protein. (315 aa)
	A6R68_12928	PCNA_C domain-containing protein. (242 aa)
	A6R68_14015	HORMA domain-containing protein. (158 aa)
	A6R68_17762	Uncharacterized protein. (288 aa)
	A6R68_22182	Uncharacterized protein. (167 aa)
	A6R68_21600	Ribosomal_S27 domain-containing protein. (85 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_00249	A6R68_01992	A0A1A6H043	A0A1A6GTG5	PCNA_C domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.988
A6R68_00249	A6R68_02225	A0A1A6H043	A0A1A6GTH9	PCNA_C domain-containing protein.	UmuC domain-containing protein.	0.932
A6R68_00249	A6R68_02319	A0A1A6H043	A0A1A6GTZ6	PCNA_C domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.970
A6R68_00249	A6R68_04835	A0A1A6H043	A0A1A6GMQ0	PCNA_C domain-containing protein.	Uncharacterized protein.	0.996
A6R68_00249	A6R68_05032	A0A1A6H043	A0A1A6GJI3	PCNA_C domain-containing protein.	Replication factor C subunit 1.	0.977
A6R68_00249	A6R68_05099	A0A1A6H043	A0A1A6GKW7	PCNA_C domain-containing protein.	Uncharacterized protein.	0.783
A6R68_00249	A6R68_06850	A0A1A6H043	A0A1A6GH37	PCNA_C domain-containing protein.	UmuC domain-containing protein.	0.932
A6R68_00249	A6R68_08373	A0A1A6H043	A0A1A6G569	PCNA_C domain-containing protein.	DUF4683 domain-containing protein.	0.947
A6R68_00249	A6R68_09992	A0A1A6H043	A0A1A6FY96	PCNA_C domain-containing protein.	RPA_C domain-containing protein.	0.889
A6R68_00249	A6R68_10640	A0A1A6H043	A0A1A6FXB5	PCNA_C domain-containing protein.	RPA_C domain-containing protein.	0.889
A6R68_00249	A6R68_14015	A0A1A6H043	A0A1A6HA75	PCNA_C domain-containing protein.	HORMA domain-containing protein.	0.821
A6R68_00249	A6R68_17762	A0A1A6H043	A0A1A6HBY5	PCNA_C domain-containing protein.	Uncharacterized protein.	0.947
A6R68_00249	A6R68_20378	A0A1A6H043	A0A1A6HTU8	PCNA_C domain-containing protein.	DNA_pol_B domain-containing protein.	0.947
A6R68_00249	A6R68_20472	A0A1A6H043	A0A1A6HTH6	PCNA_C domain-containing protein.	AAA domain-containing protein.	0.985
A6R68_00249	A6R68_21600	A0A1A6H043	A0A1A6HR47	PCNA_C domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.953
A6R68_00249	A6R68_22182	A0A1A6H043	A0A1A6HMW6	PCNA_C domain-containing protein.	Uncharacterized protein.	0.991
A6R68_00249	A6R68_22420	A0A1A6H043	A0A1A6HZH2	PCNA_C domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.968
A6R68_00915	A6R68_21600	A0A1A6GYW3	A0A1A6HR47	BTB domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.581
A6R68_00915	A6R68_23815	A0A1A6GYW3	A0A1A6HVD2	BTB domain-containing protein.	BTB domain-containing protein.	0.664
A6R68_01992	A6R68_00249	A0A1A6GTG5	A0A1A6H043	ATPase_AAA_core domain-containing protein.	PCNA_C domain-containing protein.	0.988