35 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_22295	Uncharacterized protein. (361 aa)
	A6R68_23433	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2166 aa)
	A6R68_23461	Uncharacterized protein. (497 aa)
	A6R68_22957	DNA_pol_B_exo1 domain-containing protein. (592 aa)
	A6R68_23815	BTB domain-containing protein. (768 aa)
	A6R68_20472	AAA domain-containing protein. (346 aa)
	A6R68_20828	Uncharacterized protein. (462 aa)
	A6R68_21600	Ribosomal_S27 domain-containing protein. (85 aa)
	A6R68_21329	CULLIN_2 domain-containing protein; Belongs to the cullin family. (687 aa)
	A6R68_22182	Uncharacterized protein. (167 aa)
	A6R68_18594	RING-type domain-containing protein. (105 aa)
	A6R68_18234	SAP domain-containing protein. (265 aa)
	A6R68_16708	Uncharacterized protein. (90 aa)
	A6R68_17270	CULLIN_2 domain-containing protein; Belongs to the cullin family. (892 aa)
	A6R68_17608	USP domain-containing protein. (586 aa)
	A6R68_17762	Uncharacterized protein. (288 aa)
	A6R68_14352	WD_REPEATS_REGION domain-containing protein. (455 aa)
	A6R68_12589	CULLIN_2 domain-containing protein; Belongs to the cullin family. (70 aa)
	A6R68_12928	PCNA_C domain-containing protein. (242 aa)
	A6R68_12527	Uncharacterized protein. (107 aa)
	A6R68_12590	Uncharacterized protein. (89 aa)
	A6R68_00249	PCNA_C domain-containing protein. (96 aa)
	A6R68_00915	BTB domain-containing protein. (479 aa)
	A6R68_02319	ATPase_AAA_core domain-containing protein. (1581 aa)
	A6R68_01992	ATPase_AAA_core domain-containing protein. (116 aa)
	A6R68_02365	WD_REPEATS_REGION domain-containing protein. (622 aa)
	A6R68_04835	Uncharacterized protein. (137 aa)
	A6R68_05099	Uncharacterized protein. (96 aa)
	A6R68_05032	Replication factor C subunit 1. (963 aa)
	A6R68_06749	KxDL domain-containing protein. (177 aa)
	A6R68_06975	DNA_pol_E_B domain-containing protein. (276 aa)
	A6R68_09992	RPA_C domain-containing protein. (174 aa)
	A6R68_10076	CPSF_A domain-containing protein. (1093 aa)
	A6R68_10640	RPA_C domain-containing protein. (315 aa)
	A6R68_22420	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (597 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_00249	A6R68_01992	A0A1A6H043	A0A1A6GTG5	PCNA_C domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.988
A6R68_00249	A6R68_02319	A0A1A6H043	A0A1A6GTZ6	PCNA_C domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.970
A6R68_00249	A6R68_02365	A0A1A6H043	A0A1A6GRY9	PCNA_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.978
A6R68_00249	A6R68_04835	A0A1A6H043	A0A1A6GMQ0	PCNA_C domain-containing protein.	Uncharacterized protein.	0.996
A6R68_00249	A6R68_05032	A0A1A6H043	A0A1A6GJI3	PCNA_C domain-containing protein.	Replication factor C subunit 1.	0.977
A6R68_00249	A6R68_05099	A0A1A6H043	A0A1A6GKW7	PCNA_C domain-containing protein.	Uncharacterized protein.	0.783
A6R68_00249	A6R68_06975	A0A1A6H043	A0A1A6GFE5	PCNA_C domain-containing protein.	DNA_pol_E_B domain-containing protein.	0.865
A6R68_00249	A6R68_09992	A0A1A6H043	A0A1A6FY96	PCNA_C domain-containing protein.	RPA_C domain-containing protein.	0.889
A6R68_00249	A6R68_10076	A0A1A6H043	A0A1A6FXT9	PCNA_C domain-containing protein.	CPSF_A domain-containing protein.	0.689
A6R68_00249	A6R68_10640	A0A1A6H043	A0A1A6FXB5	PCNA_C domain-containing protein.	RPA_C domain-containing protein.	0.889
A6R68_00249	A6R68_12527	A0A1A6H043	A0A1A6H3H3	PCNA_C domain-containing protein.	Uncharacterized protein.	0.541
A6R68_00249	A6R68_12589	A0A1A6H043	A0A1A6H4T4	PCNA_C domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.785
A6R68_00249	A6R68_12590	A0A1A6H043	A0A1A6H3B6	PCNA_C domain-containing protein.	Uncharacterized protein.	0.785
A6R68_00249	A6R68_14352	A0A1A6H043	A0A1A6H9Y7	PCNA_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.693
A6R68_00249	A6R68_16708	A0A1A6H043	A0A1A6HE47	PCNA_C domain-containing protein.	Uncharacterized protein.	0.750
A6R68_00249	A6R68_17270	A0A1A6H043	A0A1A6HCH4	PCNA_C domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.785
A6R68_00249	A6R68_17608	A0A1A6H043	A0A1A6HCD1	PCNA_C domain-containing protein.	USP domain-containing protein.	0.922
A6R68_00249	A6R68_17762	A0A1A6H043	A0A1A6HBY5	PCNA_C domain-containing protein.	Uncharacterized protein.	0.947
A6R68_00249	A6R68_18234	A0A1A6H043	A0A1A6HM98	PCNA_C domain-containing protein.	SAP domain-containing protein.	0.973
A6R68_00249	A6R68_18594	A0A1A6H043	A0A1A6HMS1	PCNA_C domain-containing protein.	RING-type domain-containing protein.	0.689