STRINGSTRING
A6R68_04835 A6R68_04835 A6R68_11703 A6R68_11703 A6R68_11702 A6R68_11702 A6R68_11561 A6R68_11561 A6R68_11616 A6R68_11616 A6R68_11735 A6R68_11735 A6R68_10813 A6R68_10813 A6R68_11560 A6R68_11560 A6R68_11040 A6R68_11040 A6R68_10640 A6R68_10640 A6R68_10076 A6R68_10076 A6R68_10888 A6R68_10888 A6R68_09992 A6R68_09992 A6R68_10108 A6R68_10108 A6R68_10138 A6R68_10138 A6R68_09371 A6R68_09371 A6R68_09715 A6R68_09715 A6R68_09160 A6R68_09160 A6R68_08877 A6R68_08877 A6R68_08229 A6R68_08229 A6R68_07849 A6R68_07849 A6R68_07435 A6R68_07435 A6R68_07449 A6R68_07449 A6R68_07011 A6R68_07011 A6R68_07016 A6R68_07016 A6R68_06602 A6R68_06602 A6R68_06975 A6R68_06975 A6R68_06749 A6R68_06749 A6R68_05595 A6R68_05595 A6R68_05032 A6R68_05032 A6R68_05099 A6R68_05099 A6R68_04764 A6R68_04764 A6R68_04765 A6R68_04765 A6R68_02916 A6R68_02916 A6R68_03242 A6R68_03242 A6R68_02526 A6R68_02526 A6R68_02611 A6R68_02611 A6R68_02026 A6R68_02026 A6R68_01992 A6R68_01992 A6R68_02319 A6R68_02319 A6R68_01610 A6R68_01610 A6R68_01499 A6R68_01499 A6R68_01250 A6R68_01250 A6R68_01107 A6R68_01107 A6R68_00804 A6R68_00804 A6R68_00810 A6R68_00810 A6R68_00878 A6R68_00878 A6R68_00471 A6R68_00471 A6R68_00915 A6R68_00915 A6R68_00561 A6R68_00561 A6R68_00269 A6R68_00269 A6R68_00249 A6R68_00249 A6R68_12701 A6R68_12701 A6R68_12590 A6R68_12590 A6R68_12527 A6R68_12527 A6R68_12928 A6R68_12928 A6R68_12589 A6R68_12589 A6R68_15541 A6R68_15541 A6R68_15512 A6R68_15512 A6R68_14856 A6R68_14856 A6R68_15543 A6R68_15543 A6R68_15522 A6R68_15522 A6R68_15513 A6R68_15513 A6R68_14462 A6R68_14462 A6R68_14223 A6R68_14223 A6R68_14687 A6R68_14687 A6R68_17798 A6R68_17798 A6R68_17762 A6R68_17762 A6R68_17270 A6R68_17270 A6R68_14159 A6R68_14159 A6R68_17392 A6R68_17392 A6R68_17304 A6R68_17304 A6R68_17230 A6R68_17230 A6R68_16708 A6R68_16708 A6R68_16614 A6R68_16614 A6R68_16632 A6R68_16632 A6R68_16867 A6R68_16867 A6R68_18901 A6R68_18901 A6R68_18540 A6R68_18540 A6R68_18744 A6R68_18744 A6R68_18594 A6R68_18594 A6R68_22182 A6R68_22182 A6R68_21951 A6R68_21951 A6R68_21329 A6R68_21329 A6R68_21952 A6R68_21952 A6R68_20943 A6R68_20943 A6R68_21600 A6R68_21600 A6R68_20828 A6R68_20828 A6R68_21304 A6R68_21304 A6R68_20643 A6R68_20643 A6R68_20495 A6R68_20495 A6R68_20314 A6R68_20314 A6R68_20472 A6R68_20472 A6R68_23815 A6R68_23815 A6R68_23724 A6R68_23724 A6R68_23518 A6R68_23518 A6R68_23538 A6R68_23538 A6R68_23454 A6R68_23454 A6R68_23517 A6R68_23517 A6R68_22957 A6R68_22957 A6R68_23461 A6R68_23461 A6R68_23433 A6R68_23433 A6R68_22420 A6R68_22420 A6R68_22433 A6R68_22433 A6R68_22295 A6R68_22295
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A6R68_04835Uncharacterized protein. (137 aa)
A6R68_11703Uncharacterized protein. (470 aa)
A6R68_11702Uncharacterized protein. (129 aa)
A6R68_11561Uncharacterized protein. (466 aa)
A6R68_11616CYCLIN domain-containing protein; Belongs to the cyclin family. (175 aa)
A6R68_11735XPA_C domain-containing protein. (100 aa)
A6R68_10813Uncharacterized protein. (71 aa)
A6R68_11560Uncharacterized protein. (762 aa)
A6R68_11040MAT1 domain-containing protein. (156 aa)
A6R68_10640RPA_C domain-containing protein. (315 aa)
A6R68_10076CPSF_A domain-containing protein. (1093 aa)
A6R68_10888Uncharacterized protein. (237 aa)
A6R68_09992RPA_C domain-containing protein. (174 aa)
A6R68_10108S1 domain-containing protein. (172 aa)
A6R68_10138Uncharacterized protein. (504 aa)
A6R68_09371Uncharacterized protein. (479 aa)
A6R68_09715RPOLD domain-containing protein. (194 aa)
A6R68_09160Helicase C-terminal domain-containing protein. (482 aa)
A6R68_08877PCI domain-containing protein. (376 aa)
A6R68_08229AAA_12 domain-containing protein. (62 aa)
A6R68_07849Uncharacterized protein. (353 aa)
A6R68_07435USP domain-containing protein. (882 aa)
A6R68_07449Uncharacterized protein. (362 aa)
A6R68_07011U1-type domain-containing protein. (318 aa)
A6R68_07016Uncharacterized protein. (985 aa)
A6R68_06602Uncharacterized protein. (212 aa)
A6R68_06975DNA_pol_E_B domain-containing protein. (276 aa)
A6R68_06749KxDL domain-containing protein. (177 aa)
A6R68_05595Helicase C-terminal domain-containing protein. (744 aa)
A6R68_05032Replication factor C subunit 1. (963 aa)
A6R68_05099Uncharacterized protein. (96 aa)
A6R68_04764Uncharacterized protein. (149 aa)
A6R68_04765Protein kinase domain-containing protein. (257 aa)
A6R68_02916Uncharacterized protein. (123 aa)
A6R68_03242Uncharacterized protein. (180 aa)
A6R68_02526Uncharacterized protein. (175 aa)
A6R68_02611Uncharacterized protein. (2312 aa)
A6R68_02026Uncharacterized protein. (127 aa)
A6R68_01992ATPase_AAA_core domain-containing protein. (116 aa)
A6R68_02319ATPase_AAA_core domain-containing protein. (1581 aa)
A6R68_01610Helicase ATP-binding domain-containing protein. (733 aa)
A6R68_01499UmuC domain-containing protein. (287 aa)
A6R68_01250Uncharacterized protein. (297 aa)
A6R68_01107DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1698 aa)
A6R68_00804RNA_pol_L_2 domain-containing protein. (130 aa)
A6R68_00810Uncharacterized protein. (2340 aa)
A6R68_00878DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (127 aa)
A6R68_00471PCI domain-containing protein. (542 aa)
A6R68_00915BTB domain-containing protein. (479 aa)
A6R68_00561Uncharacterized protein. (67 aa)
A6R68_00269Uncharacterized protein. (210 aa)
A6R68_00249PCNA_C domain-containing protein. (96 aa)
A6R68_12701PCI domain-containing protein. (262 aa)
A6R68_12590Uncharacterized protein. (89 aa)
A6R68_12527Uncharacterized protein. (107 aa)
A6R68_12928PCNA_C domain-containing protein. (242 aa)
A6R68_12589CULLIN_2 domain-containing protein; Belongs to the cullin family. (70 aa)
A6R68_15541RNA_pol_Rpb2_2 domain-containing protein. (208 aa)
A6R68_15512Uncharacterized protein. (296 aa)
A6R68_14856General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
A6R68_15543Uncharacterized protein. (481 aa)
A6R68_15522WD_REPEATS_REGION domain-containing protein. (205 aa)
A6R68_15513Uncharacterized protein. (401 aa)
A6R68_14462Uncharacterized protein. (70 aa)
A6R68_14223RPOLD domain-containing protein. (275 aa)
A6R68_14687Uncharacterized protein. (198 aa)
A6R68_17798DNA_LIGASE_A3 domain-containing protein. (270 aa)
A6R68_17762Uncharacterized protein. (288 aa)
A6R68_17270CULLIN_2 domain-containing protein; Belongs to the cullin family. (892 aa)
A6R68_14159TFIIS central domain-containing protein. (675 aa)
A6R68_17392CSN7a_helixI domain-containing protein. (119 aa)
A6R68_17304Uncharacterized protein. (226 aa)
A6R68_17230PCI domain-containing protein. (220 aa)
A6R68_16708Uncharacterized protein. (90 aa)
A6R68_16614RPOL4c domain-containing protein. (130 aa)
A6R68_16632Uncharacterized protein. (528 aa)
A6R68_16867Uncharacterized protein. (121 aa)
A6R68_18901DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
A6R68_18540PCI domain-containing protein. (329 aa)
A6R68_18744Uncharacterized protein. (342 aa)
A6R68_18594RING-type domain-containing protein. (105 aa)
A6R68_22182Uncharacterized protein. (167 aa)
A6R68_21951Uncharacterized protein. (314 aa)
A6R68_21329CULLIN_2 domain-containing protein; Belongs to the cullin family. (687 aa)
A6R68_21952Uncharacterized protein. (68 aa)
A6R68_20943Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (206 aa)
A6R68_21600Ribosomal_S27 domain-containing protein. (85 aa)
A6R68_20828Uncharacterized protein. (462 aa)
A6R68_21304MPN domain-containing protein. (319 aa)
A6R68_20643Uncharacterized protein. (310 aa)
A6R68_20495Uncharacterized protein. (882 aa)
A6R68_20314DNA_LIGASE_A3 domain-containing protein. (42 aa)
A6R68_20472AAA domain-containing protein. (346 aa)
A6R68_23815BTB domain-containing protein. (768 aa)
A6R68_23724ERCC4 domain-containing protein. (896 aa)
A6R68_23518Uncharacterized protein. (72 aa)
A6R68_23538Uncharacterized protein. (568 aa)
A6R68_23454PCI domain-containing protein. (209 aa)
A6R68_23517Uncharacterized protein. (195 aa)
A6R68_22957DNA_pol_B_exo1 domain-containing protein. (592 aa)
A6R68_23461Uncharacterized protein. (497 aa)
A6R68_23433DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2166 aa)
A6R68_22420Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (597 aa)
A6R68_22433Helicase ATP-binding domain-containing protein. (116 aa)
A6R68_22295Uncharacterized protein. (361 aa)
Your Current Organism:
Neotoma lepida
NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat
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