21 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_09055	Uncharacterized protein. (910 aa)
	A6R68_05032	Replication factor C subunit 1. (963 aa)
	A6R68_07417	Uncharacterized protein. (150 aa)
	A6R68_09056	DNA_pol_B domain-containing protein. (201 aa)
	A6R68_04835	Uncharacterized protein. (137 aa)
	A6R68_01992	ATPase_AAA_core domain-containing protein. (116 aa)
	A6R68_02319	ATPase_AAA_core domain-containing protein. (1581 aa)
	A6R68_00915	BTB domain-containing protein. (479 aa)
	A6R68_00249	PCNA_C domain-containing protein. (96 aa)
	A6R68_00414	Uncharacterized protein. (149 aa)
	A6R68_13818	DNA polymerase. (930 aa)
	A6R68_12527	Uncharacterized protein. (107 aa)
	A6R68_12928	PCNA_C domain-containing protein. (242 aa)
	A6R68_22182	Uncharacterized protein. (167 aa)
	A6R68_20828	Uncharacterized protein. (462 aa)
	A6R68_20472	AAA domain-containing protein. (346 aa)
	A6R68_20275	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (607 aa)
	A6R68_23815	BTB domain-containing protein. (768 aa)
	A6R68_22957	DNA_pol_B_exo1 domain-containing protein. (592 aa)
	A6R68_23461	Uncharacterized protein. (497 aa)
	A6R68_22295	Uncharacterized protein. (361 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_00249	A6R68_00414	A0A1A6H043	A0A1A6H085	PCNA_C domain-containing protein.	Uncharacterized protein.	0.954
A6R68_00249	A6R68_01992	A0A1A6H043	A0A1A6GTG5	PCNA_C domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.988
A6R68_00249	A6R68_02319	A0A1A6H043	A0A1A6GTZ6	PCNA_C domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.970
A6R68_00249	A6R68_04835	A0A1A6H043	A0A1A6GMQ0	PCNA_C domain-containing protein.	Uncharacterized protein.	0.996
A6R68_00249	A6R68_05032	A0A1A6H043	A0A1A6GJI3	PCNA_C domain-containing protein.	Replication factor C subunit 1.	0.977
A6R68_00249	A6R68_07417	A0A1A6H043	A0A1A6GDW4	PCNA_C domain-containing protein.	Uncharacterized protein.	0.942
A6R68_00249	A6R68_09055	A0A1A6H043	A0A1A6G0U9	PCNA_C domain-containing protein.	Uncharacterized protein.	0.957
A6R68_00249	A6R68_09056	A0A1A6H043	A0A1A6G1U9	PCNA_C domain-containing protein.	DNA_pol_B domain-containing protein.	0.957
A6R68_00249	A6R68_12527	A0A1A6H043	A0A1A6H3H3	PCNA_C domain-containing protein.	Uncharacterized protein.	0.541
A6R68_00249	A6R68_13818	A0A1A6H043	A0A1A6H1A0	PCNA_C domain-containing protein.	DNA polymerase.	0.957
A6R68_00249	A6R68_20275	A0A1A6H043	A0A1A6HUX2	PCNA_C domain-containing protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.925
A6R68_00249	A6R68_20472	A0A1A6H043	A0A1A6HTH6	PCNA_C domain-containing protein.	AAA domain-containing protein.	0.985
A6R68_00249	A6R68_20828	A0A1A6H043	A0A1A6HRX5	PCNA_C domain-containing protein.	Uncharacterized protein.	0.956
A6R68_00249	A6R68_22182	A0A1A6H043	A0A1A6HMW6	PCNA_C domain-containing protein.	Uncharacterized protein.	0.991
A6R68_00249	A6R68_22957	A0A1A6H043	A0A1A6HXU5	PCNA_C domain-containing protein.	DNA_pol_B_exo1 domain-containing protein.	0.986
A6R68_00249	A6R68_23461	A0A1A6H043	A0A1A6HXV0	PCNA_C domain-containing protein.	Uncharacterized protein.	0.976
A6R68_00414	A6R68_00249	A0A1A6H085	A0A1A6H043	Uncharacterized protein.	PCNA_C domain-containing protein.	0.954
A6R68_00414	A6R68_01992	A0A1A6H085	A0A1A6GTG5	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.955
A6R68_00414	A6R68_02319	A0A1A6H085	A0A1A6GTZ6	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.940
A6R68_00414	A6R68_04835	A0A1A6H085	A0A1A6GMQ0	Uncharacterized protein.	Uncharacterized protein.	0.993