20 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_21856	HECT domain-containing protein. (648 aa)
	A6R68_22789	Uncharacterized protein. (855 aa)
	A6R68_22838	HECT domain-containing protein. (709 aa)
	A6R68_18638	HECT domain-containing protein. (320 aa)
	A6R68_18552	Uncharacterized protein. (2970 aa)
	A6R68_16049	HECT domain-containing protein. (841 aa)
	A6R68_16765	Uncharacterized protein. (666 aa)
	A6R68_16477	Uncharacterized protein. (507 aa)
	A6R68_15353	Uncharacterized protein. (171 aa)
	A6R68_15025	Uncharacterized protein. (599 aa)
	A6R68_15761	Uncharacterized protein. (403 aa)
	A6R68_15419	HECT domain-containing protein. (530 aa)
	A6R68_12383	HECT domain-containing protein. (523 aa)
	A6R68_13012	Uncharacterized protein. (2279 aa)
	A6R68_00092	HECT domain-containing protein. (1116 aa)
	A6R68_02605	Uncharacterized protein. (626 aa)
	A6R68_06096	Uncharacterized protein. (631 aa)
	A6R68_07337	HECT domain-containing protein. (753 aa)
	A6R68_08235	Uncharacterized protein. (553 aa)
	A6R68_10046	HECT domain-containing protein. (4196 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_00092	A6R68_02605	A0A1A6H0N5	A0A1A6GT72	HECT domain-containing protein.	Uncharacterized protein.	0.860
A6R68_02605	A6R68_00092	A0A1A6GT72	A0A1A6H0N5	Uncharacterized protein.	HECT domain-containing protein.	0.860
A6R68_02605	A6R68_12383	A0A1A6GT72	A0A1A6H3Z4	Uncharacterized protein.	HECT domain-containing protein.	0.446
A6R68_02605	A6R68_15419	A0A1A6GT72	A0A1A6H6V1	Uncharacterized protein.	HECT domain-containing protein.	0.446
A6R68_02605	A6R68_16049	A0A1A6GT72	A0A1A6HHL2	Uncharacterized protein.	HECT domain-containing protein.	0.576
A6R68_02605	A6R68_18638	A0A1A6GT72	A0A1A6HML4	Uncharacterized protein.	HECT domain-containing protein.	0.446
A6R68_02605	A6R68_21856	A0A1A6GT72	A0A1A6HQE4	Uncharacterized protein.	HECT domain-containing protein.	0.446
A6R68_02605	A6R68_22789	A0A1A6GT72	A0A1A6HZU9	Uncharacterized protein.	Uncharacterized protein.	0.576
A6R68_02605	A6R68_22838	A0A1A6GT72	A0A1A6HZM2	Uncharacterized protein.	HECT domain-containing protein.	0.576
A6R68_06096	A6R68_08235	A0A1A6GHP1	A0A1A6G5I5	Uncharacterized protein.	Uncharacterized protein.	0.833
A6R68_06096	A6R68_15025	A0A1A6GHP1	A0A1A6H800	Uncharacterized protein.	Uncharacterized protein.	0.941
A6R68_06096	A6R68_15353	A0A1A6GHP1	A0A1A6H920	Uncharacterized protein.	Uncharacterized protein.	0.894
A6R68_06096	A6R68_16049	A0A1A6GHP1	A0A1A6HHL2	Uncharacterized protein.	HECT domain-containing protein.	0.632
A6R68_06096	A6R68_16477	A0A1A6GHP1	A0A1A6HEQ9	Uncharacterized protein.	Uncharacterized protein.	0.834
A6R68_06096	A6R68_16765	A0A1A6GHP1	A0A1A6HEV5	Uncharacterized protein.	Uncharacterized protein.	0.908
A6R68_06096	A6R68_22789	A0A1A6GHP1	A0A1A6HZU9	Uncharacterized protein.	Uncharacterized protein.	0.640
A6R68_06096	A6R68_22838	A0A1A6GHP1	A0A1A6HZM2	Uncharacterized protein.	HECT domain-containing protein.	0.640
A6R68_07337	A6R68_12383	A0A1A6GED7	A0A1A6H3Z4	HECT domain-containing protein.	HECT domain-containing protein.	0.799
A6R68_07337	A6R68_15419	A0A1A6GED7	A0A1A6H6V1	HECT domain-containing protein.	HECT domain-containing protein.	0.803
A6R68_07337	A6R68_18552	A0A1A6GED7	A0A1A6HL93	HECT domain-containing protein.	Uncharacterized protein.	0.513