38 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_06469	Uncharacterized protein. (971 aa)
	A6R68_22272	Uncharacterized protein. (661 aa)
	A6R68_11237	Uncharacterized protein. (591 aa)
	A6R68_10656	Uncharacterized protein. (586 aa)
	A6R68_11002	Uncharacterized protein. (731 aa)
	A6R68_11370	Uncharacterized protein. (594 aa)
	A6R68_10878	Uncharacterized protein. (853 aa)
	A6R68_10541	Uncharacterized protein. (1209 aa)
	A6R68_08917	Uncharacterized protein. (636 aa)
	A6R68_09262	Uncharacterized protein. (553 aa)
	A6R68_09199	Uncharacterized protein. (1385 aa)
	A6R68_08408	Uncharacterized protein. (417 aa)
	A6R68_06674	Uncharacterized protein. (1341 aa)
	A6R68_06521	Uncharacterized protein. (882 aa)
	A6R68_06391	Uncharacterized protein. (707 aa)
	A6R68_06288	Uncharacterized protein. (1604 aa)
	A6R68_04633	Uncharacterized protein. (594 aa)
	A6R68_04574	Uncharacterized protein. (323 aa)
	A6R68_03817	Uncharacterized protein. (884 aa)
	A6R68_03917	DH domain-containing protein. (794 aa)
	A6R68_03831	DH domain-containing protein. (638 aa)
	A6R68_02597	Uncharacterized protein. (780 aa)
	A6R68_01277	Uncharacterized protein. (468 aa)
	A6R68_12806	Uncharacterized protein. (1019 aa)
	A6R68_12616	Uncharacterized protein. (800 aa)
	A6R68_15406	Uncharacterized protein. (1248 aa)
	A6R68_14311	Uncharacterized protein. (707 aa)
	A6R68_16908	Uncharacterized protein. (762 aa)
	A6R68_16665	DH domain-containing protein. (611 aa)
	A6R68_19105	DH domain-containing protein. (1357 aa)
	A6R68_21750	Uncharacterized protein. (1664 aa)
	A6R68_21733	Uncharacterized protein. (948 aa)
	A6R68_21127	Uncharacterized protein. (575 aa)
	A6R68_21022	Uncharacterized protein. (501 aa)
	A6R68_20677	Uncharacterized protein. (1062 aa)
	A6R68_20595	Uncharacterized protein. (969 aa)
	A6R68_20515	Uncharacterized protein. (1074 aa)
	A6R68_20170	Uncharacterized protein. (739 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_01277	A6R68_06288	A0A1A6GXV5	A0A1A6GIM9	Uncharacterized protein.	Uncharacterized protein.	0.511
A6R68_01277	A6R68_11370	A0A1A6GXV5	A0A1A6FWD5	Uncharacterized protein.	Uncharacterized protein.	0.435
A6R68_01277	A6R68_12806	A0A1A6GXV5	A0A1A6H1Y0	Uncharacterized protein.	Uncharacterized protein.	0.612
A6R68_01277	A6R68_19105	A0A1A6GXV5	A0A1A6HJR0	Uncharacterized protein.	DH domain-containing protein.	0.554
A6R68_02597	A6R68_04574	A0A1A6GSI1	A0A1A6GKZ6	Uncharacterized protein.	Uncharacterized protein.	0.535
A6R68_02597	A6R68_06288	A0A1A6GSI1	A0A1A6GIM9	Uncharacterized protein.	Uncharacterized protein.	0.739
A6R68_02597	A6R68_06391	A0A1A6GSI1	A0A1A6GID5	Uncharacterized protein.	Uncharacterized protein.	0.439
A6R68_02597	A6R68_06469	A0A1A6GSI1	A0A1A6GFH7	Uncharacterized protein.	Uncharacterized protein.	0.779
A6R68_02597	A6R68_08408	A0A1A6GSI1	A0A1A6G3T9	Uncharacterized protein.	Uncharacterized protein.	0.412
A6R68_02597	A6R68_09199	A0A1A6GSI1	A0A1A6G1J0	Uncharacterized protein.	Uncharacterized protein.	0.707
A6R68_02597	A6R68_11237	A0A1A6GSI1	A0A1A6FVL1	Uncharacterized protein.	Uncharacterized protein.	0.673
A6R68_02597	A6R68_11370	A0A1A6GSI1	A0A1A6FWD5	Uncharacterized protein.	Uncharacterized protein.	0.657
A6R68_02597	A6R68_12806	A0A1A6GSI1	A0A1A6H1Y0	Uncharacterized protein.	Uncharacterized protein.	0.853
A6R68_02597	A6R68_14311	A0A1A6GSI1	A0A1A6HC03	Uncharacterized protein.	Uncharacterized protein.	0.437
A6R68_02597	A6R68_16665	A0A1A6GSI1	A0A1A6HG12	Uncharacterized protein.	DH domain-containing protein.	0.441
A6R68_02597	A6R68_16908	A0A1A6GSI1	A0A1A6HED1	Uncharacterized protein.	Uncharacterized protein.	0.472
A6R68_02597	A6R68_20170	A0A1A6GSI1	A0A1A6HT42	Uncharacterized protein.	Uncharacterized protein.	0.471
A6R68_02597	A6R68_20515	A0A1A6GSI1	A0A1A6HSQ9	Uncharacterized protein.	Uncharacterized protein.	0.707
A6R68_02597	A6R68_20677	A0A1A6GSI1	A0A1A6HSA8	Uncharacterized protein.	Uncharacterized protein.	0.439
A6R68_02597	A6R68_21022	A0A1A6GSI1	A0A1A6HRB8	Uncharacterized protein.	Uncharacterized protein.	0.534